Difference between revisions of "CPD-19161"

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(Created page with "Category:Gene == Gene Tiso_gene_9922 == * left end position: ** 4457 * transcription direction: ** NEGATIVE * right end position: ** 6446 * centisome position: ** 49.67123...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_9922 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] ==
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* left end position:
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* taxonomic range:
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** 4457
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* transcription direction:
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* common name:
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** NEGATIVE
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** heterolactic fermentation
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* right end position:
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** 6446
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−
* centisome position:
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** 49.671234   
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* Synonym(s):
 
* Synonym(s):
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** lactate heterofermentation
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** glucose fermentation to lactate
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** phosphoketolase pathway
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[3PGAREARR-RXN]]
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'''14''' reactions found over '''18''' reactions in the full pathway
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** in-silico_annotation
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* [[2PGADEHYDRAT-RXN]]
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***ec-number
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** 4 associated gene(s):
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* [[RXN-15509]]
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*** [[Tiso_gene_14718]]
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** in-silico_annotation
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*** [[Tiso_gene_8720]]
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***ec-number
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*** [[Tiso_gene_5619]]
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* [[RXN-15510]]
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*** [[Tiso_gene_13317]]
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** in-silico_annotation
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** 7 reconstruction source(s) associated:
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***ec-number
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*** [[annotation-experimental_annotation]]
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* [[RXN-15511]]
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*** [[orthology-esiliculosus]]
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** in-silico_annotation
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*** [[annotation-in-silico_annotation]]
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***ec-number
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*** [[orthology-athaliana]]
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* [[RXN-15512]]
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*** [[orthology-synechocystis]]
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** in-silico_annotation
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*** [[manual-primary_network]]
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***ec-number
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*** [[orthology-creinhardtii]]
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* [[6PGLUCONDEHYDROG-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_91]]
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*** [[Tiso_gene_20238]]
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*** [[Tiso_gene_7157]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[6PGLUCONOLACT-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_8585]]
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*** [[Tiso_gene_10799]]
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*** [[Tiso_gene_20412]]
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*** [[Tiso_gene_15950]]
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*** [[Tiso_gene_5901]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ACETALD-DEHYDROG-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_7649]]
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*** [[Tiso_gene_2052]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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* [[ALCOHOL-DEHYDROG-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_7649]]
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*** [[Tiso_gene_18459]]
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*** [[Tiso_gene_6562]]
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*** [[Tiso_gene_6563]]
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*** [[Tiso_gene_5424]]
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*** [[Tiso_gene_5425]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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* [[FRUCTOKINASE-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_17974]]
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*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_6766]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLU6PDEHYDROG-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_16918]]
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*** [[Tiso_gene_14877]]
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** 4 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_14642]]
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*** [[Tiso_gene_18264]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_10879]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
 
* [[RXN-15513]]
 
* [[RXN-15513]]
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** in-silico_annotation
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** 8 associated gene(s):
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***ec-number
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*** [[Tiso_gene_7201]]
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== Pathways associated ==
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*** [[Tiso_gene_9922]]
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* [[PWY-1042]]
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*** [[Tiso_gene_2841]]
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* [[P341-PWY]]
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*** [[Tiso_gene_14530]]
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* [[PWY-2221]]
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*** [[Tiso_gene_9923]]
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* [[PWY-1622]]
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*** [[Tiso_gene_16271]]
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* [[GLUCONEO-PWY]]
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*** [[Tiso_gene_2365]]
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* [[GLYCOLYSIS]]
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*** [[Tiso_gene_14664]]
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* [[PWY-6901]]
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** 2 reconstruction source(s) associated:
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* [[ANAGLYCOLYSIS-PWY]]
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*** [[annotation-experimental_annotation]]
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* [[PWY-7218]]
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*** [[annotation-in-silico_annotation]]
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* [[PWY-6405]]
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== Reaction(s) not found ==
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* [[P124-PWY]]
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* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
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* [[PWY-6886]]
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* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
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* [[PWY66-399]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [[PWY-5723]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
−
* [[PWY-6142]]
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−
* [[PWY-5484]]
+
−
* [[PWY-7124]]
+
−
* [[P122-PWY]]
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−
* [[PWY-7003]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=4457}}
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{{#set: taxonomic range=TAX-1239}}
−
{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=heterolactic fermentation}}
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{{#set: right end position=6446}}
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{{#set: common name=lactate heterofermentation|glucose fermentation to lactate|phosphoketolase pathway}}
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{{#set: centisome position=49.671234    }}
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{{#set: reaction found=14}}
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{{#set: reaction associated=3PGAREARR-RXN|RXN-15509|RXN-15510|RXN-15511|RXN-15512|RXN-15513}}
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{{#set: total reaction=18}}
−
{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|PWY-1622|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6405|P124-PWY|PWY-6886|PWY66-399|PWY-5723|PWY-6142|PWY-5484|PWY-7124|P122-PWY|PWY-7003}}
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{{#set: completion rate=78.0}}

Revision as of 18:24, 18 March 2018

Pathway P122-PWY

  • taxonomic range:
  • common name:
    • heterolactic fermentation
  • Synonym(s):
    • lactate heterofermentation
    • glucose fermentation to lactate
    • phosphoketolase pathway

Reaction(s) found

14 reactions found over 18 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-19161&oldid=24131"