Difference between revisions of "RXN1G-72"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE CHOLINE] == * smiles: ** C(CO)[N+](C)(C)C * inchi key: ** InChIKey=OEYIOHPDSNJKLS-UHFFF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** structural_maintenan...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE CHOLINE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
−
* smiles:
+
* direction:
−
** C(CO)[N+](C)(C)C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=OEYIOHPDSNJKLS-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** choline
+
** ORF
−
* molecular weight:
+
** structural_maintenance_of_chromosomes_protein_6
−
** 104.172   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
−
** (2-hydroxyethyl)trimethylammonium
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN0-7230]]
+
* With identifiers:
−
* [[2.3.1.91-RXN]]
+
** 1 [[tRNA-Sec]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
−
* [[2.7.8.24-RXN]]
+
* With common name(s):
−
* [[CHOLINE-KINASE-RXN]]
+
** 1 a tRNAsec[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
−
== Reaction(s) known to produce the compound ==
+
 
−
* [[RXN-17758]]
+
== Genes associated with this reaction  ==
−
* [[ACETYLCHOLINESTERASE-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
== Reaction(s) of unknown directionality ==
+
* [[Tiso_gene_587]]
−
* [[CHD-RXN]]
+
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1684]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10015]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1682]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 62-49-7
+
* LIGAND-RXN:
−
* CAS : 123-41-1
+
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
−
* Wikipedia : Choline
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* METABOLIGHTS : MTBLC15354
+
{{#set: common name=ORF}}
−
* DRUGBANK : DB00122
+
{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
−
* PUBCHEM:
+
{{#set: ec number=EC-6.1.1.11}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=305 305]
+
{{#set: gene associated=Tiso_gene_587|Tiso_gene_1684|Tiso_gene_10015|Tiso_gene_1682}}
−
* HMDB : HMDB00097
+
{{#set: in pathway=PWY0-901|PWY-6281}}
−
* LIGAND-CPD:
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00114 C00114]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
* CHEMSPIDER:
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.chemspider.com/Chemical-Structure.299.html 299]
+
−
* CHEBI:
+
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15354 15354]
+
−
* BIGG : chol
+
−
{{#set: smiles=C(CO)[N+](C)(C)C}}
+
−
{{#set: inchi key=InChIKey=OEYIOHPDSNJKLS-UHFFFAOYSA-N}}
+
−
{{#set: common name=choline}}
+
−
{{#set: molecular weight=104.172    }}
+
−
{{#set: common name=(2-hydroxyethyl)trimethylammonium}}
+
−
{{#set: consumed by=RXN0-7230|2.3.1.91-RXN|2.7.8.24-RXN|CHOLINE-KINASE-RXN}}
+
−
{{#set: produced by=RXN-17758|ACETYLCHOLINESTERASE-RXN}}
+
−
{{#set: consumed or produced by=CHD-RXN}}
+

Revision as of 19:25, 18 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAsec[c] + 1 ATP[c] + 1 L-serine[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1G-72&oldid=24266"