Difference between revisions of "MALONYL-ACP"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
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[[Category:Pathway]]
 
[[Category:Pathway]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5427 PWY-5427] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] ==
 
* taxonomic range:
 
* taxonomic range:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
−
** naphthalene degradation (aerobic)
+
** Bifidobacterium shunt
 
* Synonym(s):
 
* Synonym(s):
 +
** Bifidum fermentation
 +
** Bifidum pathway
 +
** fructose-6-phosphate pathway
 +
** Bifidum shunt
 +
** glucose fermentation to lactate (Bifidobacteria)
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''1''' reactions found over '''6''' reactions in the full pathway
+
  '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[1.2.1.65-RXN]]
+
* [[1TRANSKETO-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_5008]]
 +
*** [[Tiso_gene_11559]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[2PGADEHYDRAT-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_14718]]
 +
*** [[Tiso_gene_8720]]
 +
*** [[Tiso_gene_5619]]
 +
*** [[Tiso_gene_13317]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[3PGAREARR-RXN]]
 +
** 16 associated gene(s):
 +
*** [[Tiso_gene_2667]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_15048]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16754]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_5468]]
 +
*** [[Tiso_gene_20311]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_15391]]
 +
*** [[Tiso_gene_14212]]
 +
*** [[Tiso_gene_10516]]
 +
*** [[Tiso_gene_9923]]
 +
*** [[Tiso_gene_7201]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GAPOXNPHOSPHN-RXN]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_6766]]
 +
*** [[Tiso_gene_10646]]
 +
*** [[Tiso_gene_3344]]
 +
*** [[Tiso_gene_235]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GLUCOKIN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_3107]]
 +
*** [[Tiso_gene_1303]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PEPDEPHOS-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_14504]]
 +
*** [[Tiso_gene_18206]]
 +
*** [[Tiso_gene_974]]
 +
*** [[Tiso_gene_14505]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PGLUCISOM-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_19480]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PHOSGLYPHOS-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_3527]]
 +
*** [[Tiso_gene_18263]]
 +
*** [[Tiso_gene_12104]]
 +
*** [[Tiso_gene_3526]]
 +
*** [[Tiso_gene_14642]]
 +
*** [[Tiso_gene_18264]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RIB5PISOM-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18217]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[manual-primary_network]]
 +
* [[RIBULP3EPIM-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_4754]]
 +
*** [[Tiso_gene_19140]]
 +
*** [[Tiso_gene_10879]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[TRANSALDOL-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_17601]]
 +
*** [[Tiso_gene_1831]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.29-RXN 1.3.1.29-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
−
* [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHALENE-12-DIOXYGENASE-RXN NAPHTHALENE-12-DIOXYGENASE-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8612 RXN-8612]
+
* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8615 RXN-8615]
+
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXNN-386 RXNN-386]
+
 
== External links  ==
 
== External links  ==
−
* UM-BBD-PWY : naph
+
{{#set: taxonomic range=TAX-201174}}
−
{{#set: taxonomic range=TAX-2}}
+
{{#set: common name=Bifidobacterium shunt}}
−
{{#set: common name=naphthalene degradation (aerobic)}}
+
{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}}
−
{{#set: reaction found=1}}
+
{{#set: reaction found=11}}
−
{{#set: reaction not found=6}}
+
{{#set: total reaction=15}}
−
{{#set: completion rate=17.0}}
+
{{#set: completion rate=73.0}}

Revision as of 18:28, 18 March 2018

Pathway P124-PWY

  • taxonomic range:
  • common name:
    • Bifidobacterium shunt
  • Synonym(s):
    • Bifidum fermentation
    • Bifidum pathway
    • fructose-6-phosphate pathway
    • Bifidum shunt
    • glucose fermentation to lactate (Bifidobacteria)

Reaction(s) found

11 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=MALONYL-ACP&oldid=24571"