Difference between revisions of "ACCOAth"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBDEHYDROG-RXN PYRROLINECARBDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBDEHYDROG-RXN PYRROLINECARBDEHYDROG-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** 2-oxoglutarate decarboxylation to succinyl-CoA
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** 1-pyrroline-5-carboxylate dehydrogenase
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** ORF
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** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
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** delta-1-pyrroline-5-carboxylate_synthase
 
* Synonym(s):
 
* Synonym(s):
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** 2-oxoglutarate dehydrogenase complex
 
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** 2-ketoglutarate dehydrogenase complex
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[2OXOGLUTDECARB-RXN]]
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** 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c]
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* [[RXN-7716]]
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* With common name(s):
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* [[RXN0-1147]]
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** 1 (S)-1-pyrroline-5-carboxylate[c] '''+''' 2 H2O[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADH[c]
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== Reaction(s) not found ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_18338]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9680]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_886]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_16634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3513]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_6952]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_7381]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
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* [[Tiso_gene_18337]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5084 PWY-5084]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16417 16417]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00707 R00707]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: common name=2-oxoglutarate decarboxylation to succinyl-CoA}}
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** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
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{{#set: common name=2-oxoglutarate dehydrogenase complex|2-ketoglutarate dehydrogenase complex}}
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** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P09546 P09546]
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{{#set: reaction not found=3}}
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** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
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** [http://www.uniprot.org/uniprot/O24897 O24897]
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** [http://www.uniprot.org/uniprot/Q59426 Q59426]
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** [http://www.uniprot.org/uniprot/P07275 P07275]
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** [http://www.uniprot.org/uniprot/P10503 P10503]
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** [http://www.uniprot.org/uniprot/P74275 P74275]
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** [http://www.uniprot.org/uniprot/O74766 O74766]
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** [http://www.uniprot.org/uniprot/P95629 P95629]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=1-pyrroline-5-carboxylate dehydrogenase}}
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{{#set: common name=ORF}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
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{{#set: gene associated=Tiso_gene_18338|Tiso_gene_9680|Tiso_gene_886|Tiso_gene_16634|Tiso_gene_3513|Tiso_gene_6952|Tiso_gene_7381|Tiso_gene_18337}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:29, 18 March 2018

Reaction PYRROLINECARBDEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-pyrroline-5-carboxylate dehydrogenase
    • ORF
    • delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
    • delta-1-pyrroline-5-carboxylate_synthase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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