Difference between revisions of "Tiso gene 13520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutaminase ** aspara...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7347 PWY-7347] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-32011 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7347 PWY-7347] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-32011 TAX-32011]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40222 TAX-40222]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-429 TAX-429]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39773 TAX-39773]
 
* common name:
 
* common name:
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** glutaminase
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** sucrose biosynthesis III
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** asparagine_synthetase
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** glutamine_amidotransferase
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** ferredoxin-dependent_glutamate_synthase
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** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
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** carbamoyl_phosphate_synthetase
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** asparagine_synthetase_domaincontaining_protein_putat
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** glutamate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
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** [http://enzyme.expasy.org/EC/3.5.1.2 EC-3.5.1.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[PGLUCISOM-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 L-glutamine[c] '''=>''' 1 L-glutamate[c] '''+''' 1 ammonium[c]
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17058]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[SUCROSE-PHOSPHATE-SYNTHASE-RXN]]
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***AUTOMATED-NAME-MATCH
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** 1 associated gene(s):
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* [[Tiso_gene_3435]]
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*** [[Tiso_gene_14247]]
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** IN-SILICO_ANNOTATION
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** 1 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17333]]
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== Reaction(s) not found ==
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATASE-RXN]
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***EC-NUMBER
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* [[Tiso_gene_3434]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_19661]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4976]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1773]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4685]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4975]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6657]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1154]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7495]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2973]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2581]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11511]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[GLUTAMINDEG-PWY]], L-glutamine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINDEG-PWY GLUTAMINDEG-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-32011}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15889 15889]
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{{#set: taxonomic range=TAX-40222}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-429}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
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{{#set: taxonomic range=TAX-39773}}
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* UNIPROT:
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{{#set: common name=sucrose biosynthesis III}}
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** [http://www.uniprot.org/uniprot/P10172 P10172]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P28492 P28492]
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{{#set: total reaction=3}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=67.0}}
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{{#set: common name=glutaminase}}
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{{#set: common name=asparagine_synthetase}}
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{{#set: common name=glutamine_amidotransferase}}
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{{#set: common name=ferredoxin-dependent_glutamate_synthase}}
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{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
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{{#set: common name=glutamate_synthase}}
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{{#set: ec number=EC-3.5.1.38}}
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{{#set: ec number=EC-3.5.1.2}}
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−
{{#set: gene associated=Tiso_gene_17058|Tiso_gene_3435|Tiso_gene_17333|Tiso_gene_3434|Tiso_gene_19661|Tiso_gene_4976|Tiso_gene_1773|Tiso_gene_4685|Tiso_gene_4975|Tiso_gene_6657|Tiso_gene_1154|Tiso_gene_7495|Tiso_gene_2973|Tiso_gene_2581|Tiso_gene_11511}}
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{{#set: in pathway=GLUTAMINDEG-PWY|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:29, 18 March 2018

Pathway PWY-7347

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13520&oldid=24786"