Difference between revisions of "Negatively-super-coiled-DNAs"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPDQT-38 CPDQT-38] == * smiles: ** CSCCCCCC(C(O)C(=O)[O-])C(=O)[O-] * inchi key: ** InChIKey=YB...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770] == * direction: ** LEFT-TO-RIGHT * common name: ** plastid_phosphoglycerate_muta...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPDQT-38 CPDQT-38] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770] ==
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* smiles:
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* direction:
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** CSCCCCCC(C(O)C(=O)[O-])C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=YBISUHXEJDGADQ-UHFFFAOYSA-L
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* common name:
 
* common name:
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** 3-(5'-methylthio)pentylmalate
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** plastid_phosphoglycerate_mutase_protein
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* molecular weight:
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* ec number:
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** 248.293   
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** [http://enzyme.expasy.org/EC/3.1.3.73 EC-3.1.3.73]
 
* Synonym(s):
 
* Synonym(s):
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** 3-(5'-methylthio)pentylmalic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXNQT-4171]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ADENOSYLCOBALAMIN-5-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSYLCOBALAMIN]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-18204]]
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** 1 adenosylcobalamin 5'-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 adenosylcobalamin[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_16271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[COBALSYN-PWY]], adenosylcobalamin salvage from cobinamide I: [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6269]], adenosylcobalamin salvage from cobinamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5509]], adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5509 PWY-5509]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237178 44237178]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30370 30370]
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{{#set: smiles=CSCCCCCC(C(O)C(=O)[O-])C(=O)[O-]}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=YBISUHXEJDGADQ-UHFFFAOYSA-L}}
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{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
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{{#set: common name=3-(5'-methylthio)pentylmalate}}
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{{#set: ec number=EC-3.1.3.73}}
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{{#set: molecular weight=248.293    }}
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{{#set: gene associated=Tiso_gene_16271}}
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{{#set: common name=3-(5'-methylthio)pentylmalic acid}}
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{{#set: in pathway=COBALSYN-PWY|PWY-6269|PWY-5509}}
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{{#set: consumed by=RXNQT-4171}}
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{{#set: reconstruction category=annotation}}
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{{#set: consumed or produced by=RXN-18204}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 18:29, 18 March 2018

Reaction RXN-8770

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • plastid_phosphoglycerate_mutase_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • COBALSYN-PWY, adenosylcobalamin salvage from cobinamide I: COBALSYN-PWY
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6269, adenosylcobalamin salvage from cobinamide II: PWY-6269
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-5509, adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I: PWY-5509
    • 2 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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