Difference between revisions of "TRANSALDOL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** oxidoreductase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.28 EC-1.2.1.28]
+
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[BENZALDEHYDE]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD0-2352]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 benzaldehyde[c] '''<=>''' 1 benzoate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
+
** 1 H2O[c] '''+''' 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_14345]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10972]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_3898]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10971]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14344]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6763]], salicortin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6763 PWY-6763]
+
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-1501]], mandelate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1501 PWY-1501]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6766]], salicin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6766 PWY-6766]
+
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
−
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate: [http://metacyc.org/META/NEW-IMAGE?object=TOLUENE-DEG-CATECHOL-PWY TOLUENE-DEG-CATECHOL-PWY]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6446 PWY-6446]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6444 PWY-6444]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43503 P43503]
+
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P41812 P41812]
−
{{#set: ec number=EC-1.2.1.28}}
+
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
−
{{#set: in pathway=PWY-6763|PWY-1501|PWY-6766|TOLUENE-DEG-CATECHOL-PWY|PWY-6446|PWY-6444}}
+
** [http://www.uniprot.org/uniprot/P48206 P48206]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
 +
** [http://www.uniprot.org/uniprot/P29433 P29433]
 +
** [http://www.uniprot.org/uniprot/P25817 P25817]
 +
** [http://www.uniprot.org/uniprot/P22835 P22835]
 +
** [http://www.uniprot.org/uniprot/P25814 P25814]
 +
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
 +
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=oxidoreductase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.1.26.5}}
 +
{{#set: gene associated=Tiso_gene_14345|Tiso_gene_10972|Tiso_gene_3898|Tiso_gene_10971|Tiso_gene_14344}}
 +
{{#set: in pathway=PWY0-1479}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:29, 18 March 2018

Reaction 3.1.26.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • oxidoreductase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 a tRNA precursor with a 5' extension and a short 3' extension[c] => 1 a tRNA precursor with a short 3' extension[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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