Difference between revisions of "RXN-13673"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4361 PWY-4361] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4361 PWY-4361] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
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** polyketide_synthase
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** S-methyl-5-thio-α-D-ribose 1-phosphate degradation
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
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** D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 
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** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 
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** β-hydroxypalmitoyl thioester dehydratase
 
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** β-hydroxypalmityl-ACP dehydrase
 
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''7''' reactions in the full pathway
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** 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* [[5.3.1.23-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''=>''' 1 a trans hexadecenoyl-[acp][c] '''+''' 1 H2O[c]
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*** [[Tiso_gene_3805]]
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*** [[Tiso_gene_18341]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_136]]
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== Reaction(s) not found ==
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=R145-RXN R145-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=R147-RXN R147-RXN]
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* [[Tiso_gene_500]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R82-RXN R82-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=R83-RXN R83-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13072 RXN-13072]
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* [[Tiso_gene_13394]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15650 RXN-15650]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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{{#set: common name=S-methyl-5-thio-α-D-ribose 1-phosphate degradation}}
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=14.0}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: common name=D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|β-hydroxypalmitoyl thioester dehydratase|β-hydroxypalmityl-ACP dehydrase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_6884|Tiso_gene_135}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:30, 18 March 2018

Pathway PWY-4361

Reaction(s) found

1 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13673&oldid=24934"