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| [[Category:Reaction]] | | [[Category:Reaction]] |
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] == |
| * direction: | | * direction: |
− | ** REVERSIBLE | + | ** LEFT-TO-RIGHT |
− | * common name:
| + | |
− | ** ORF
| + | |
| * ec number: | | * ec number: |
− | ** [http://enzyme.expasy.org/EC/5.3.1.1 EC-5.3.1.1] | + | ** [http://enzyme.expasy.org/EC/3.1.2.21 EC-3.1.2.21] |
| * Synonym(s): | | * Synonym(s): |
| | | |
| == Reaction Formula == | | == Reaction Formula == |
| * With identifiers: | | * With identifiers: |
− | ** 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] | + | ** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[DODECANOATE]][c] |
| * With common name(s): | | * With common name(s): |
− | ** 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 glycerone phosphate[c] | + | ** 1 a dodecanoyl-[acp][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 laurate[c] |
| | | |
| == Genes associated with this reaction == | | == Genes associated with this reaction == |
− | Genes have been associated with this reaction based on different elements listed below.
| |
− | * [[Tiso_gene_10646]]
| |
− | ** [[pantograph]]-[[esiliculosus]]
| |
− | * [[Tiso_gene_19961]]
| |
− | ** IN-SILICO_ANNOTATION
| |
− | ***EC-NUMBER
| |
− | ** EXPERIMENTAL_ANNOTATION
| |
− | ***EC-NUMBER
| |
− | ** [[pantograph]]-[[athaliana]]
| |
− | ** [[pantograph]]-[[athaliana]]
| |
− | ** [[pantograph]]-[[synechocystis]]
| |
− | ** [[pantograph]]-[[esiliculosus]]
| |
− | ** [[pantograph]]-[[creinhardtii]]
| |
− | * [[Tiso_gene_19962]]
| |
− | ** IN-SILICO_ANNOTATION
| |
− | ***EC-NUMBER
| |
− | * [[Tiso_gene_20000]]
| |
− | ** [[pantograph]]-[[esiliculosus]]
| |
| == Pathways == | | == Pathways == |
− | * [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042] | + | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] |
− | ** '''9''' reactions found over '''10''' reactions in the full pathway | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] | + | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] |
− | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
| + | |
− | ** '''8''' reactions found over '''10''' reactions in the full pathway
| + | |
− | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
| + | |
− | ** '''11''' reactions found over '''12''' reactions in the full pathway
| + | |
− | * [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
| + | |
− | ** '''13''' reactions found over '''13''' reactions in the full pathway
| + | |
− | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
| + | |
− | ** '''12''' reactions found over '''12''' reactions in the full pathway
| + | |
− | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
| + | |
− | ** '''8''' reactions found over '''14''' reactions in the full pathway
| + | |
− | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
| + | |
− | ** '''13''' reactions found over '''13''' reactions in the full pathway
| + | |
− | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
| + | |
− | ** '''10''' reactions found over '''10''' reactions in the full pathway
| + | |
− | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
| + | |
− | ** '''11''' reactions found over '''11''' reactions in the full pathway
| + | |
− | * [[PWY66-373]], sucrose degradation V (sucrose α-glucosidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-373 PWY66-373]
| + | |
− | ** '''4''' reactions found over '''5''' reactions in the full pathway
| + | |
− | * [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
| + | |
− | ** '''10''' reactions found over '''12''' reactions in the full pathway | + | |
| == Reconstruction information == | | == Reconstruction information == |
− | * [[orthology]]: | + | * Category: [[gap-filling]] |
− | ** [[pantograph]]: | + | ** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]] |
− | *** [[creinhardtii]]
| + | *** Tool: [[meneco]] |
− | *** [[synechocystis]] | + | **** Comment: [[added for gapfilling]] |
− | *** [[athaliana]] | + | |
− | *** [[esiliculosus]] | + | |
− | * [[manual]]:
| + | |
− | ** [[primary_network]]
| + | |
− | * [[annotation]]:
| + | |
− | ** [[pathwaytools]]:
| + | |
− | *** [[experimental_annotation]]
| + | |
− | *** [[in-silico_annotation]]
| + | |
| == External links == | | == External links == |
− | * RHEA:
| |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18585 18585]
| |
| * LIGAND-RXN: | | * LIGAND-RXN: |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015] | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04014 R04014] |
− | * UNIPROT:
| + | {{#set: direction=LEFT-TO-RIGHT}} |
− | ** [http://www.uniprot.org/uniprot/P19118 P19118]
| + | {{#set: ec number=EC-3.1.2.21}} |
− | ** [http://www.uniprot.org/uniprot/P21820 P21820]
| + | {{#set: in pathway=PWY-5971|PWY-5994}} |
− | ** [http://www.uniprot.org/uniprot/P48501 P48501]
| + | {{#set: reconstruction category=gap-filling}} |
− | ** [http://www.uniprot.org/uniprot/P62002 P62002]
| + | {{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}} |
− | ** [http://www.uniprot.org/uniprot/O27120 O27120]
| + | {{#set: reconstruction tool=meneco}} |
− | ** [http://www.uniprot.org/uniprot/P27876 P27876]
| + | {{#set: reconstruction comment=added for gapfilling}} |
− | ** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
| + | |
− | ** [http://www.uniprot.org/uniprot/P19583 P19583]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
| + | |
− | ** [http://www.uniprot.org/uniprot/P47721 P47721]
| + | |
− | ** [http://www.uniprot.org/uniprot/P47670 P47670]
| + | |
− | ** [http://www.uniprot.org/uniprot/P50918 P50918]
| + | |
− | ** [http://www.uniprot.org/uniprot/P43727 P43727]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q58923 Q58923]
| + | |
− | ** [http://www.uniprot.org/uniprot/O28965 O28965]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q59182 Q59182]
| + | |
− | ** [http://www.uniprot.org/uniprot/O59536 O59536]
| + | |
− | ** [http://www.uniprot.org/uniprot/P36204 P36204]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
| + | |
− | ** [http://www.uniprot.org/uniprot/P04828 P04828]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00943 P00943]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00942 P00942]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00940 P00940]
| + | |
− | ** [http://www.uniprot.org/uniprot/P60175 P60175]
| + | |
− | ** [http://www.uniprot.org/uniprot/P0A858 P0A858]
| + | |
− | ** [http://www.uniprot.org/uniprot/P60174 P60174]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00941 P00941]
| + | |
− | ** [http://www.uniprot.org/uniprot/P15426 P15426]
| + | |
− | ** [http://www.uniprot.org/uniprot/P17751 P17751]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00939 P00939]
| + | |
− | ** [http://www.uniprot.org/uniprot/P12863 P12863]
| + | |
− | ** [http://www.uniprot.org/uniprot/P07669 P07669]
| + | |
− | ** [http://www.uniprot.org/uniprot/P35144 P35144]
| + | |
− | ** [http://www.uniprot.org/uniprot/P48494 P48494]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
| + | |
− | ** [http://www.uniprot.org/uniprot/P29613 P29613]
| + | |
− | ** [http://www.uniprot.org/uniprot/P30741 P30741]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01893 Q01893]
| + | |
− | ** [http://www.uniprot.org/uniprot/P48499 P48499]
| + | |
− | ** [http://www.uniprot.org/uniprot/P48496 P48496]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46226 P46226]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46225 P46225]
| + | |
− | ** [http://www.uniprot.org/uniprot/P48492 P48492]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q56738 Q56738]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46711 P46711]
| + | |
− | ** [http://www.uniprot.org/uniprot/O32757 O32757]
| + | |
− | ** [http://www.uniprot.org/uniprot/O74067 O74067]
| + | |
− | ** [http://www.uniprot.org/uniprot/P48491 P48491]
| + | |
− | {{#set: direction=REVERSIBLE}} | + | |
− | {{#set: common name=ORF}}
| + | |
− | {{#set: ec number=EC-5.3.1.1}} | + | |
− | {{#set: gene associated=Tiso_gene_10646|Tiso_gene_19961|Tiso_gene_19962|Tiso_gene_20000}}
| + | |
− | {{#set: in pathway=PWY-1042|P341-PWY|PWY-7003|P185-PWY|GLUCONEO-PWY|GLYCOLYSIS|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|PWY66-373|PWY66-399}} | + | |
− | {{#set: reconstruction category=orthology}} | + | |
− | {{#set: reconstruction tool=pantograph}}
| + | |
− | {{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}} | + | |
− | {{#set: reconstruction category=manual}}
| + | |
− | {{#set: reconstruction source=primary_network}}
| + | |
− | {{#set: reconstruction category=annotation}}
| + | |
− | {{#set: reconstruction tool=pathwaytools}} | + | |
− | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}} | + | |