Difference between revisions of "Tiso gene 20543"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-19488 CPD-19488] == * smiles: ** CSCCCCCCC(C(=O)C(=O)[O-])C(=O)[O-] * inchi key: ** InChIKe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-19488 CPD-19488] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
−
* smiles:
+
* direction:
−
** CSCCCCCCC(C(=O)C(=O)[O-])C(=O)[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=PBYOKOGRHHZTHQ-UHFFFAOYSA-L
+
 
* common name:
 
* common name:
−
** 3-isopropyl-9-(methylthio)-2-oxononanoate
+
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
−
* molecular weight:
+
** polyketide_synthase
−
** 260.304   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
 +
** crotonoyl-[acyl-carrier-protein] hydratase
 +
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
 +
** β-hydroxybutyryl acyl carrier protein dehydrase
 +
** enoyl acyl carrier protein hydrase
 +
** crotonyl acyl carrier protein hydratase
 +
** 3-hydroxybutyryl acyl carrier protein dehydratase
 +
** β-hydroxybutyryl acyl carrier  protein dehydrase
 +
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 +
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-18203]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
−
* [[RXN-18202]]
+
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6884]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10876]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_500]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: smiles=CSCCCCCCC(C(=O)C(=O)[O-])C(=O)[O-]}}
+
* LIGAND-RXN:
−
{{#set: inchi key=InChIKey=PBYOKOGRHHZTHQ-UHFFFAOYSA-L}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
−
{{#set: common name=3-isopropyl-9-(methylthio)-2-oxononanoate}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: molecular weight=260.304    }}
+
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
−
{{#set: consumed by=RXN-18203}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: consumed or produced by=RXN-18202}}
+
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-4.2.1.59}}
 +
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
 +
{{#set: gene associated=Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500}}
 +
{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 18:32, 18 March 2018

Reaction 4.2.1.58-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
    • polyketide_synthase
  • ec number:
  • Synonym(s):
    • crotonoyl-[acyl-carrier-protein] hydratase
    • β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
    • β-hydroxybutyryl acyl carrier protein dehydrase
    • enoyl acyl carrier protein hydrase
    • crotonyl acyl carrier protein hydratase
    • 3-hydroxybutyryl acyl carrier protein dehydratase
    • β-hydroxybutyryl acyl carrier protein dehydrase
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

"(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase" cannot be used as a page name in this wiki.



  • "crotonoyl-[acyl-carrier-protein] hydratase" cannot be used as a page name in this wiki.
  • "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)" cannot be used as a page name in this wiki.
  • "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20543&oldid=25188"