Difference between revisions of "GTCY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
+
** [http://enzyme.expasy.org/EC/1.3.1.93 EC-1.3.1.93]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[L-CITRULLINE]][c]
+
** 1 [[Donor-H2]][c] '''+''' 1 [[CPD-14425]][c] '''=>''' 1 [[CPD-14426]][c] '''+''' 1 [[Acceptor]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 carbamoyl phosphate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 L-citrulline[c]
+
** 1 a reduced electron acceptor[c] '''+''' 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] '''=>''' 1 docosapentaenoyl-CoA[c] '''+''' 1 an oxidized electron acceptor[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_18444]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
+
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
 +
** '''14''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
+
{{#set: ec number=EC-1.3.1.93}}
−
* LIGAND-RXN:
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
+
−
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
+
−
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
+
−
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
+
−
** [http://www.uniprot.org/uniprot/P11727 P11727]
+
−
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
+
−
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
+
−
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
+
−
** [http://www.uniprot.org/uniprot/P44770 P44770]
+
−
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
+
−
** [http://www.uniprot.org/uniprot/P11066 P11066]
+
−
** [http://www.uniprot.org/uniprot/P11803 P11803]
+
−
** [http://www.uniprot.org/uniprot/P18186 P18186]
+
−
** [http://www.uniprot.org/uniprot/P05150 P05150]
+
−
** [http://www.uniprot.org/uniprot/P14995 P14995]
+
−
** [http://www.uniprot.org/uniprot/P06960 P06960]
+
−
** [http://www.uniprot.org/uniprot/P04391 P04391]
+
−
** [http://www.uniprot.org/uniprot/P00480 P00480]
+
−
** [http://www.uniprot.org/uniprot/P11725 P11725]
+
−
** [http://www.uniprot.org/uniprot/P21302 P21302]
+
−
** [http://www.uniprot.org/uniprot/P11724 P11724]
+
−
** [http://www.uniprot.org/uniprot/P08308 P08308]
+
−
** [http://www.uniprot.org/uniprot/P68747 P68747]
+
−
** [http://www.uniprot.org/uniprot/P00481 P00481]
+
−
** [http://www.uniprot.org/uniprot/P31317 P31317]
+
−
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
+
−
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
+
−
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
+
−
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
+
−
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
+
−
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
+
−
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
+
−
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
+
−
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
+
−
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
+
−
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
+
−
** [http://www.uniprot.org/uniprot/P75473 P75473]
+
−
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
+
−
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
+
−
** [http://www.uniprot.org/uniprot/O53089 O53089]
+
−
** [http://www.uniprot.org/uniprot/O50039 O50039]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.1.3.3}}
+
−
{{#set: gene associated=Tiso_gene_18444}}
+
−
{{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 18:33, 18 March 2018

Reaction RXN-13445

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced electron acceptor[c] + 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] => 1 docosapentaenoyl-CoA[c] + 1 an oxidized electron acceptor[c]

Genes associated with this reaction

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GTCY&oldid=25242"