Difference between revisions of "Tiso gene 10958"

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(Created page with "Category:Gene == Gene Tiso_gene_16197 == * left end position: ** 3296 * transcription direction: ** NEGATIVE * right end position: ** 4245 * centisome position: ** 73.0172...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] == * direction: ** REVERSIBLE * common name: ** cytoplasmic...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16197 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] ==
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* left end position:
+
* direction:
−
** 3296
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** REVERSIBLE
−
* transcription direction:
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* common name:
−
** NEGATIVE
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** cytoplasmic
−
* right end position:
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** pgm_pmm
−
** 4245
+
* ec number:
−
* centisome position:
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** [http://enzyme.expasy.org/EC/5.4.2.2 EC-5.4.2.2]
−
** 73.01728   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
−
* [[ADENYLYLSULFKIN-RXN]]
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* With identifiers:
−
** [[pantograph]]-[[synechocystis]]
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** 1 [[GLC-1-P]][c] '''<=>''' 1 [[D-glucopyranose-6-phosphate]][c]
−
* [[INORGPYROPHOSPHAT-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 &alpha;-D-glucopyranose 1-phosphate[c] '''<=>''' 1 D-glucopyranose 6-phosphate[c]
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***ec-number
+
 
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
−
** [[pantograph]]-[[synechocystis]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13477]]
−
== Pathways associated ==
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** IN-SILICO_ANNOTATION
−
* [[PWY-7805]]
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***EC-NUMBER
−
* [[PWY-7807]]
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** EXPERIMENTAL_ANNOTATION
−
* [[PWY-5340]]
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***EC-NUMBER
 +
* [[Tiso_gene_4816]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6731]], starch degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6731 PWY-6731]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6737]], starch degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6737 PWY-6737]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5940]], streptomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940]
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3296}}
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* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23536 23536]
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{{#set: right end position=4245}}
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* PIR:
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{{#set: centisome position=73.01728    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41801 A41801]
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{{#set: reaction associated=ADENYLYLSULFKIN-RXN|INORGPYROPHOSPHAT-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A53614 A53614]
−
{{#set: pathway associated=PWY-7805|PWY-7807|PWY-5340}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B53614 B53614]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70650 E70650]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64803 G64803]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81947 G81947]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39487 I39487]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I41215 I41215]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRB PMRB]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRBI PMRBI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRT PMRT]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S10741 S10741]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39397 S39397]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41199 S41199]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41200 S41200]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76847 S76847]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78440 S78440]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04326 T04326]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04327 T04327]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12574 T12574]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52656 T52656]
 +
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00959 R00959]
 +
* UNIPROT:
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** [http://www.uniprot.org/uniprot/P36871 P36871]
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** [http://www.uniprot.org/uniprot/P40390 P40390]
 +
** [http://www.uniprot.org/uniprot/P40391 P40391]
 +
** [http://www.uniprot.org/uniprot/P95090 P95090]
 +
** [http://www.uniprot.org/uniprot/P36938 P36938]
 +
** [http://www.uniprot.org/uniprot/P57002 P57002]
 +
** [http://www.uniprot.org/uniprot/P38569 P38569]
 +
** [http://www.uniprot.org/uniprot/P31120 P31120]
 +
** [http://www.uniprot.org/uniprot/P00949 P00949]
 +
** [http://www.uniprot.org/uniprot/P38652 P38652]
 +
** [http://www.uniprot.org/uniprot/Q7M2K5 Q7M2K5]
 +
** [http://www.uniprot.org/uniprot/Q16106 Q16106]
 +
** [http://www.uniprot.org/uniprot/P33401 P33401]
 +
** [http://www.uniprot.org/uniprot/P37012 P37012]
 +
** [http://www.uniprot.org/uniprot/P74643 P74643]
 +
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
 +
** [http://www.uniprot.org/uniprot/P93804 P93804]
 +
** [http://www.uniprot.org/uniprot/P93805 P93805]
 +
** [http://www.uniprot.org/uniprot/P93262 P93262]
 +
** [http://www.uniprot.org/uniprot/Q9SCY0 Q9SCY0]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=cytoplasmic}}
 +
{{#set: common name=pgm_pmm}}
 +
{{#set: ec number=EC-5.4.2.2}}
 +
{{#set: gene associated=Tiso_gene_13477|Tiso_gene_4816}}
 +
{{#set: in pathway=PWY-7238|PWY-5384|GLYCOCAT-PWY|PWY-7343|PWY-3801|PWY-622|PWY-6731|GLUCOSE1PMETAB-PWY|PWY-6737|PWY-6317|PWY-2723|GLYCOGENSYNTH-PWY|PWY-5940|PWY66-422|PWY-5941|PWY-5661}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 18:33, 18 March 2018

Reaction PHOSPHOGLUCMUT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • cytoplasmic
    • pgm_pmm
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • Tiso_gene_13477
    • IN-SILICO_ANNOTATION
      • EC-NUMBER
    • EXPERIMENTAL_ANNOTATION
      • EC-NUMBER
  • Tiso_gene_4816
    • IN-SILICO_ANNOTATION
      • EC-NUMBER
    • EXPERIMENTAL_ANNOTATION
      • EC-NUMBER

Pathways

  • PWY-7238, sucrose biosynthesis II: PWY-7238
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5384, sucrose degradation IV (sucrose phosphorylase): PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • GLYCOCAT-PWY, glycogen degradation I: GLYCOCAT-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7343, UDP-glucose biosynthesis: PWY-7343
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3801, sucrose degradation II (sucrose synthase): PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-622, starch biosynthesis: PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6731, starch degradation III: PWY-6731
    • 2 reactions found over 4 reactions in the full pathway
  • GLUCOSE1PMETAB-PWY, glucose and glucose-1-phosphate degradation: GLUCOSE1PMETAB-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6737, starch degradation V: PWY-6737
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-2723, trehalose degradation V: PWY-2723
    • 2 reactions found over 3 reactions in the full pathway
  • GLYCOGENSYNTH-PWY, glycogen biosynthesis I (from ADP-D-Glucose): GLYCOGENSYNTH-PWY
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5940, streptomycin biosynthesis: PWY-5940
    • 2 reactions found over 18 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5941, glycogen degradation II: PWY-5941
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-5661, GDP-glucose biosynthesis: PWY-5661
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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