Difference between revisions of "RXN-12399"

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(Created page with "Category:Gene == Gene Tiso_gene_6563 == * left end position: ** 2548 * transcription direction: ** POSITIVE * right end position: ** 3640 * centisome position: ** 21.14347...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** pyruvate_kinase * ec n...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6563 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] ==
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* left end position:
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* direction:
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** 2548
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** REVERSIBLE
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* transcription direction:
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* common name:
−
** POSITIVE
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** pyruvate_kinase
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* right end position:
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* ec number:
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** 3640
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** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40]
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* centisome position:
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** 21.143475   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.2.1.31-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PYRUVATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c]
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***ec-number
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* With common name(s):
−
* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
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** 1 pyruvate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 phosphoenolpyruvate[c] '''+''' 1 H+[c]
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** in-silico_annotation
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−
***ec-number
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== Genes associated with this reaction  ==
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* [[ALCOHOL-DEHYDROG-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_14504]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[ALLYSINE-DEHYDROG-RXN]]
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***EC-NUMBER
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** in-silico_annotation
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* [[Tiso_gene_18206]]
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***ec-number
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** EXPERIMENTAL_ANNOTATION
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* [[L-IDITOL-2-DEHYDROGENASE-RXN]]
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***EC-NUMBER
−
** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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* [[Tiso_gene_974]]
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* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-10781]]
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***EC-NUMBER
−
** in-silico_annotation
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** [[pantograph]]-[[athaliana]]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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* [[RXN-10855]]
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** [[pantograph]]-[[synechocystis]]
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** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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** [[pantograph]]-[[creinhardtii]]
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* [[RXN-10911]]
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** [[pantograph]]-[[creinhardtii]]
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** in-silico_annotation
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** [[pantograph]]-[[creinhardtii]]
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***ec-number
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* [[Tiso_gene_14505]]
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* [[RXN-10915]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
+
***EC-NUMBER
−
***ec-number
+
== Pathways  ==
−
* [[RXN-12448]]
+
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
−
** in-silico_annotation
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
***ec-number
+
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
−
* [[RXN-12560]]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
** in-silico_annotation
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
−
***ec-number
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[RXN-13198]]
+
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
−
** in-silico_annotation
+
** '''12''' reactions found over '''12''' reactions in the full pathway
−
***ec-number
+
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
−
* [[RXN-13279]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
−
** in-silico_annotation
+
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
−
***ec-number
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[RXN-5424]]
+
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
−
** in-silico_annotation
+
** '''7''' reactions found over '''10''' reactions in the full pathway
−
***ec-number
+
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
−
* [[RXN-5901]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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** in-silico_annotation
+
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
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***ec-number
+
** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-7644]]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** in-silico_annotation
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** '''11''' reactions found over '''15''' reactions in the full pathway
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***ec-number
+
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
−
* [[RXN-7657]]
+
** '''8''' reactions found over '''11''' reactions in the full pathway
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** in-silico_annotation
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
***ec-number
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[RXN-7693]]
+
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** in-silico_annotation
+
** '''9''' reactions found over '''16''' reactions in the full pathway
−
***ec-number
+
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
−
* [[RXN-7694]]
+
** '''8''' reactions found over '''14''' reactions in the full pathway
−
** in-silico_annotation
+
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
−
***ec-number
+
** '''14''' reactions found over '''18''' reactions in the full pathway
−
* [[RXN-7700]]
+
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
−
** in-silico_annotation
+
** '''11''' reactions found over '''11''' reactions in the full pathway
−
***ec-number
+
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
−
* [[RXN-7706]]
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
** in-silico_annotation
+
== Reconstruction information  ==
−
***ec-number
+
* Category: [[orthology]]
−
* [[RXN-8162]]
+
** Source: [[orthology-athaliana]]
−
** in-silico_annotation
+
*** Tool: [[pantograph]]
−
***ec-number
+
** Source: [[orthology-creinhardtii]]
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* [[RXN3O-4113]]
+
*** Tool: [[pantograph]]
−
** in-silico_annotation
+
** Source: [[orthology-synechocystis]]
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***ec-number
+
*** Tool: [[pantograph]]
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* [[RXN66-478]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
+
*** Tool: [[pantograph]]
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***ec-number
+
* Category: [[manual]]
−
== Pathways associated ==
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** Source: [[manual-primary_network]]
−
* [[PWY66-21]]
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* Category: [[annotation]]
−
* [[PWY-6587]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7111]]
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*** Tool: [[pathwaytools]]
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* [[FERMENTATION-PWY]]
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** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-5676]]
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*** Tool: [[pathwaytools]]
−
* [[PWY-5082]]
+
−
* [[PWY-7118]]
+
−
* [[PWY-7013]]
+
−
* [[PWY-3162]]
+
−
* [[PWY-5751]]
+
−
* [[PWY-6342]]
+
−
* [[PWY1-3]]
+
−
* [[PWY-5283]]
+
−
* [[P161-PWY]]
+
−
* [[ETOH-ACETYLCOA-ANA-PWY]]
+
−
* [[PWY-6871]]
+
−
* [[PWY-7396]]
+
−
* [[PWY-5057]]
+
−
* [[PWY-5741]]
+
−
* [[PWY-5076]]
+
−
* [[PWY-6333]]
+
−
* [[PWY-5486]]
+
−
* [[PWY-5079]]
+
−
* [[PWY-5078]]
+
−
* [[PWY-6313]]
+
−
* [[PWY66-425]]
+
−
* [[PWY-5480]]
+
−
* [[PWY-5298]]
+
−
* [[PWY3O-4108]]
+
−
* [[PWY-7216]]
+
−
* [[PWY-6802]]
+
−
* [[LYSINE-DEG1-PWY]]
+
−
* [[P122-PWY]]
+
−
* [[PWY66-389]]
+
−
* [[PWY4LZ-257]]
+
−
* [[PWY-4101]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=2548}}
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* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
−
{{#set: right end position=3640}}
+
* LIGAND-RXN:
−
{{#set: centisome position=21.143475    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
−
{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN-8162|RXN3O-4113|RXN66-478}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY66-21|PWY-6587|PWY-7111|FERMENTATION-PWY|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|PWY-5283|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY-5298|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
+
** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
 +
** [http://www.uniprot.org/uniprot/P11979 P11979]
 +
** [http://www.uniprot.org/uniprot/P11980 P11980]
 +
** [http://www.uniprot.org/uniprot/Q07637 Q07637]
 +
** [http://www.uniprot.org/uniprot/P34038 P34038]
 +
** [http://www.uniprot.org/uniprot/P43924 P43924]
 +
** [http://www.uniprot.org/uniprot/Q57572 Q57572]
 +
** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
 +
** [http://www.uniprot.org/uniprot/P19680 P19680]
 +
** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
 +
** [http://www.uniprot.org/uniprot/P80885 P80885]
 +
** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
 +
** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
 +
** [http://www.uniprot.org/uniprot/P47458 P47458]
 +
** [http://www.uniprot.org/uniprot/Q46078 Q46078]
 +
** [http://www.uniprot.org/uniprot/P30614 P30614]
 +
** [http://www.uniprot.org/uniprot/P22200 P22200]
 +
** [http://www.uniprot.org/uniprot/Q27788 Q27788]
 +
** [http://www.uniprot.org/uniprot/P51182 P51182]
 +
** [http://www.uniprot.org/uniprot/P51181 P51181]
 +
** [http://www.uniprot.org/uniprot/P31865 P31865]
 +
** [http://www.uniprot.org/uniprot/P00549 P00549]
 +
** [http://www.uniprot.org/uniprot/P00548 P00548]
 +
** [http://www.uniprot.org/uniprot/P30613 P30613]
 +
** [http://www.uniprot.org/uniprot/O75758 O75758]
 +
** [http://www.uniprot.org/uniprot/P12928 P12928]
 +
** [http://www.uniprot.org/uniprot/O30853 O30853]
 +
** [http://www.uniprot.org/uniprot/P30615 P30615]
 +
** [http://www.uniprot.org/uniprot/P30616 P30616]
 +
** [http://www.uniprot.org/uniprot/Q02499 Q02499]
 +
** [http://www.uniprot.org/uniprot/P22360 P22360]
 +
** [http://www.uniprot.org/uniprot/P21599 P21599]
 +
** [http://www.uniprot.org/uniprot/P14618 P14618]
 +
** [http://www.uniprot.org/uniprot/Q42954 Q42954]
 +
** [http://www.uniprot.org/uniprot/Q40545 Q40545]
 +
** [http://www.uniprot.org/uniprot/P52480 P52480]
 +
** [http://www.uniprot.org/uniprot/P52489 P52489]
 +
** [http://www.uniprot.org/uniprot/P78031 P78031]
 +
** [http://www.uniprot.org/uniprot/Q55863 Q55863]
 +
** [http://www.uniprot.org/uniprot/P73534 P73534]
 +
** [http://www.uniprot.org/uniprot/O65595 O65595]
 +
** [http://www.uniprot.org/uniprot/Q42806 Q42806]
 +
** [http://www.uniprot.org/uniprot/Q43117 Q43117]
 +
** [http://www.uniprot.org/uniprot/Q10208 Q10208]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=pyruvate_kinase}}
 +
{{#set: ec number=EC-2.7.1.40}}
 +
{{#set: gene associated=Tiso_gene_14504|Tiso_gene_18206|Tiso_gene_974|Tiso_gene_14505}}
 +
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|NPGLUCAT-PWY|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6901|PWY-7383|P124-PWY|PWY-6886|PWY-5723|FERMENTATION-PWY|PWY-6142|P122-PWY|PWY-5484|PWY-7003}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:34, 18 March 2018

Reaction PEPDEPHOS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • pyruvate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 5 reactions found over 9 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
    • 5 reactions found over 7 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 9 reactions found over 16 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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