Difference between revisions of "CPD0-1133"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-RIBULOSE L-RIBULOSE] == * smiles: ** C(O)C(O)C(O)C(=O)CO * inchi key: ** InChIKey=ZAQJHHRNXZU...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-RIBULOSE L-RIBULOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] ==
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* smiles:
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* direction:
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** C(O)C(O)C(O)C(=O)CO
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ZAQJHHRNXZUBTE-UCORVYFPSA-N
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* common name:
 
* common name:
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** L-ribulose
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** polyketide_synthase
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* molecular weight:
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** long_chain_acyl-_synthetase
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** 150.131   
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** acyl-_synthetase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** ribulose
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN0-5116]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CO-A]][c] '''+''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[CPD-14018]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 coenzyme A[c] '''+''' 1 icosapentaenoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 icosapentaenoyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 488-84-6
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 2042-27-5
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{{#set: common name=polyketide_synthase}}
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* PUBCHEM:
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{{#set: common name=long_chain_acyl-_synthetase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=644111 644111]
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{{#set: common name=acyl-_synthetase}}
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* HMDB : HMDB03371
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{{#set: common name=ORF}}
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* LIGAND-CPD:
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{{#set: ec number=EC-6.2.1.3}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00508 C00508]
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_9394|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_7855|Tiso_gene_10876|Tiso_gene_4191|Tiso_gene_348|Tiso_gene_135}}
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* CHEMSPIDER:
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{{#set: in pathway=}}
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** [http://www.chemspider.com/Chemical-Structure.559151.html 559151]
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{{#set: reconstruction category=orthology|annotation}}
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* CHEBI:
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16880 16880]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* BIGG : rbl__L
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{{#set: smiles=C(O)C(O)C(O)C(=O)CO}}
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{{#set: inchi key=InChIKey=ZAQJHHRNXZUBTE-UCORVYFPSA-N}}
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{{#set: common name=L-ribulose}}
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{{#set: molecular weight=150.131    }}
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{{#set: common name=ribulose}}
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{{#set: consumed by=RXN0-5116}}
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Revision as of 19:34, 18 March 2018

Reaction RXN-12978

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD0-1133&oldid=25402"