Difference between revisions of "RXN-14785"

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(Created page with "Category:Gene == Gene Tiso_gene_12960 == * left end position: ** 657 * transcription direction: ** NEGATIVE * right end position: ** 4643 * centisome position: ** 9.951529...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** long_chain_acyl-_...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_12960 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] ==
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* left end position:
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* direction:
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** 657
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** long_chain_acyl-_synthetase
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* right end position:
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** polyketide_synthase
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** 4643
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** acyl-_synthetase
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* centisome position:
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** ORF
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** 9.9515295   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PHOSPHOLIPASE-A2-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[LINOLENOYL-COA]][c] '''+''' 1 [[PPI]][c]
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***ec-number
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* With common name(s):
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* [[RXN-15065]]
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** 1 α-linolenate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 α-linolenoyl-CoA[c] '''+''' 1 diphosphate[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-15067]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_348]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[RXN-15068]]
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***EC-NUMBER
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-16138]]
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* [[Tiso_gene_4191]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-16139]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_7855]]
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* [[RXN-17735]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_10876]]
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* [[RXN-17736]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_500]]
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* [[RXN0-6725]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_13394]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[PWY66-397]]
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***EC-NUMBER
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* [[PWY-6803]]
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* [[Tiso_gene_136]]
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* [[PWY-7409]]
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** IN-SILICO_ANNOTATION
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* [[PWY66-394]]
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***EC-NUMBER
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* [[PWY66-395]]
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* [[Tiso_gene_135]]
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* [[PWY-7783]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7417]]
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***EC-NUMBER
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* [[PWY-7416]]
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* [[Tiso_gene_9394]]
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* [[LIPASYN-PWY]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-7049]], icosapentaenoate biosynthesis II (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7049 PWY-7049]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=657}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: right end position=4643}}
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{{#set: common name=polyketide_synthase}}
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{{#set: centisome position=9.9515295    }}
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{{#set: common name=acyl-_synthetase}}
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{{#set: reaction associated=PHOSPHOLIPASE-A2-RXN|RXN-15065|RXN-15067|RXN-15068|RXN-16138|RXN-16139|RXN-17735|RXN-17736|RXN0-6725}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY66-397|PWY-6803|PWY-7409|PWY66-394|PWY66-395|PWY-7783|PWY-7417|PWY-7416|LIPASYN-PWY}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_348|Tiso_gene_4191|Tiso_gene_7855|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_135|Tiso_gene_9394}}
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{{#set: in pathway=PWY-7049|PWY-7724}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:36, 18 March 2018

Reaction LINOLENOYL-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long_chain_acyl-_synthetase
    • polyketide_synthase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-linolenate[c] + 1 coenzyme A[c] + 1 ATP[c] => 1 AMP[c] + 1 α-linolenoyl-CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7049, icosapentaenoate biosynthesis II (6-desaturase, mammals): PWY-7049
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals): PWY-7724
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14785&oldid=25562"