Difference between revisions of "Tiso gene 19778"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R06284 R06284] == * direction: ** LEFT-TO-RIGHT * common name: ** R129 * Synonym(s): == Reaction F...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R06284 R06284] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** R129
+
** riboflavin_biosynthesis_protein
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[Chlorophyllides]][c] '''+''' 1.0 [[PHYTYL-PYROPHOSPHATE]][c] '''=>''' 1.0 [[PPI]][c] '''+''' 1.0 [[CHLOROPHYLL-A]][c]
+
** 3 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 a chlorophyllide[c] '''+''' 1.0 phytyl diphosphate[c] '''=>''' 1.0 diphosphate[c] '''+''' 1.0 chlorophyll a[c]
+
** 3 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 formate[c] '''+''' 2 H+[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19542]]
+
* [[Tiso_gene_14275]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_19932]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8035]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
 +
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
 +
** [http://www.uniprot.org/uniprot/O08315 O08315]
 +
** [http://www.uniprot.org/uniprot/O66679 O66679]
 +
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 +
** [http://www.uniprot.org/uniprot/O25484 O25484]
 +
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 +
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 +
** [http://www.uniprot.org/uniprot/P43525 P43525]
 +
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=R129}}
+
{{#set: common name=riboflavin_biosynthesis_protein}}
−
{{#set: gene associated=Tiso_gene_19542}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-3.5.4.25}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932|Tiso_gene_8035}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:39, 18 March 2018

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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