Difference between revisions of "Tiso gene 1916"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SCOPOLETIN SCOPOLETIN] == * smiles: ** COC2(C=C1(C(OC(=O)C=C1)=CC=2O)) * inchi key: ** InChIKey...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11662 RXN-11662] == * direction: ** REVERSIBLE * common name: ** 3-hydroxyacyl-_dehydrogenase *...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SCOPOLETIN SCOPOLETIN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11662 RXN-11662] ==
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* smiles:
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* direction:
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** COC2(C=C1(C(OC(=O)C=C1)=CC=2O))
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** REVERSIBLE
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* inchi key:
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** InChIKey=RODXRVNMMDRFIK-UHFFFAOYSA-N
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* common name:
 
* common name:
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** scopoletin
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** 3-hydroxyacyl-_dehydrogenase
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* molecular weight:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** 192.171   
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** hydroxyacyl-coenzyme_a_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-14179]]
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** 1 [[NAD]][c] '''+''' 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 NAD+[c] '''+''' 1 (S)-3-hydroxybutanoyl-CoA[c] '''<=>''' 1 NADH[c] '''+''' 1 acetoacetyl-CoA[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5857]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_16703]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14027]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14262]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14026]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18838]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18839]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
 +
== Pathways  ==
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
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** '''5''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* NCI:
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* RHEA:
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** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=405647 405647]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30799 30799]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5280460 5280460]
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** [http://www.genome.jp/dbget-bin/www_bget?R01975 R01975]
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* HMDB : HMDB34344
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{{#set: direction=REVERSIBLE}}
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* LIGAND-CPD:
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01752 C01752]
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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* CHEMSPIDER:
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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** [http://www.chemspider.com/Chemical-Structure.4444113.html 4444113]
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{{#set: ec number=EC-1.1.1.35}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_16703|Tiso_gene_14027|Tiso_gene_14262|Tiso_gene_14026|Tiso_gene_18838|Tiso_gene_18839}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17488 17488]
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{{#set: in pathway=P162-PWY|PWY-7216|CENTFERM-PWY|PWY-5177|PWY-6583|PWY-6883|PWY-7401|PWY-7778|PWY-7779|PWY-5789|PWY-6863}}
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* METABOLIGHTS : MTBLC17488
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: smiles=COC2(C=C1(C(OC(=O)C=C1)=CC=2O))}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: inchi key=InChIKey=RODXRVNMMDRFIK-UHFFFAOYSA-N}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=scopoletin}}
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{{#set: molecular weight=192.171    }}
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{{#set: produced by=RXN-14179}}
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Revision as of 18:39, 18 March 2018

Reaction RXN-11662

  • direction:
    • REVERSIBLE
  • common name:
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-7216, (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): PWY-7216
    • 3 reactions found over 5 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation: PWY-5177
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered): PWY-6883
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 5 reactions found over 17 reactions in the full pathway
  • PWY-7778, 2-methylpropene degradation: PWY-7778
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7779, methyl tert-butyl ether degradation: PWY-7779
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 16 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1916&oldid=25979"