Difference between revisions of "Tiso gene 14774"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6382 RXN0-6382] == * direction: ** LEFT-TO-RIGHT * common name: ** inosine_triphosphate * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroli...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6382 RXN0-6382] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** inosine_triphosphate
+
** dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_mitochondrial
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
+
** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2]
 
* Synonym(s):
 
* Synonym(s):
 +
** Oxoglutarate decarboxylase
 +
** 2-oxoglutarate decarboxylation
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[ITP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[IMP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 ITP[c] '''=>''' 1 H+[c] '''+''' 1 IMP[c] '''+''' 1 diphosphate[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18793]]
+
* [[Tiso_gene_10209]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18792]]
+
−
** IN-SILICO_ANNOTATION
+
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
+
** Source: [[manual-primary_network]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29399 29399]
+
** [http://www.uniprot.org/uniprot/P23129 P23129]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q02218 Q02218]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00720 R00720]
+
** [http://www.uniprot.org/uniprot/Q60597 Q60597]
 +
** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
 +
** [http://www.uniprot.org/uniprot/P20967 P20967]
 +
** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
 +
** [http://www.uniprot.org/uniprot/P20707 P20707]
 +
** [http://www.uniprot.org/uniprot/P51056 P51056]
 +
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
 +
** [http://www.uniprot.org/uniprot/O49541 O49541]
 +
** [http://www.uniprot.org/uniprot/Q59106 Q59106]
 +
** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
 +
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=inosine_triphosphate}}
+
{{#set: common name=dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_mitochondrial}}
−
{{#set: ec number=EC-3.6.1.9}}
+
{{#set: ec number=EC-1.2.4.2}}
−
{{#set: gene associated=Tiso_gene_18793|Tiso_gene_18792}}
+
{{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_10209}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY66-398|PWY-5084}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
−
{{#set: reconstruction category=annotation}}
+
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 18:41, 18 March 2018

Reaction 2OXOGLUTDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_mitochondrial
  • ec number:
  • Synonym(s):
    • Oxoglutarate decarboxylase
    • 2-oxoglutarate decarboxylation

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • Tiso_gene_10209
    • IN-SILICO_ANNOTATION
      • EC-NUMBER
    • EXPERIMENTAL_ANNOTATION
      • EC-NUMBER

Pathways

  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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