Difference between revisions of "Tiso gene 3065"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DEHYDROQUINATE DEHYDROQUINATE] == * smiles: ** C1(C(O)C(O)C(=O)CC(O)(C([O-])=O)1) * inchi key:...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DEHYDROQUINATE DEHYDROQUINATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C1(C(O)C(O)C(=O)CC(O)(C([O-])=O)1)
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* inchi key:
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** InChIKey=WVMWZWGZRAXUBK-SYTVJDICSA-M
 
* common name:
 
* common name:
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** farnesyltranstransferase
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** 3-dehydroquinate
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** geranylgeranyl_pyrophosphate_synthase
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* molecular weight:
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* ec number:
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** 189.144   
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** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
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* Synonym(s):
 
* Synonym(s):
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** 3-dehydroquinic acid
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** 5-dehydroquinic acid
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** 5-dehydroquinate
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** 5-de-H-quinate
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** rel-(1R,3R,4S)-1,3,4-trihydroxy-5-oxocyclohexanecarboxylate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
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* [[QUINATE-5-DEHYDROGENASE-RXN]]
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* With common name(s):
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* [[RXN-7967]]
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** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 geranylgeranyl diphosphate[c] '''+''' 1 diphosphate[c]
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* [[3-DEHYDROQUINATE-SYNTHASE-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7305]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_16284]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 10534-44-8
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460271 5460271]
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** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
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* HMDB : HMDB12710
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P39464 P39464]
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** [http://www.genome.jp/dbget-bin/www_bget?C00944 C00944]
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** [http://www.uniprot.org/uniprot/P24322 P24322]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P80042 P80042]
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** [http://www.chemspider.com/Chemical-Structure.4573866.html 4573866]
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** [http://www.uniprot.org/uniprot/Q12051 Q12051]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P95999 P95999]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=32364 32364]
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** [http://www.uniprot.org/uniprot/P48368 P48368]
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* BIGG : 3dhq
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** [http://www.uniprot.org/uniprot/P93227 P93227]
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{{#set: smiles=C1(C(O)C(O)C(=O)CC(O)(C([O-])=O)1)}}
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** [http://www.uniprot.org/uniprot/P93228 P93228]
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{{#set: inchi key=InChIKey=WVMWZWGZRAXUBK-SYTVJDICSA-M}}
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** [http://www.uniprot.org/uniprot/Q42698 Q42698]
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{{#set: common name=3-dehydroquinate}}
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** [http://www.uniprot.org/uniprot/Q43133 Q43133]
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{{#set: molecular weight=189.144    }}
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** [http://www.uniprot.org/uniprot/Q42866 Q42866]
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{{#set: common name=3-dehydroquinic acid|5-dehydroquinic acid|5-dehydroquinate|5-de-H-quinate|rel-(1R,3R,4S)-1,3,4-trihydroxy-5-oxocyclohexanecarboxylate}}
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** [http://www.uniprot.org/uniprot/P54976 P54976]
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{{#set: produced by=QUINATE-5-DEHYDROGENASE-RXN|RXN-7967|3-DEHYDROQUINATE-SYNTHASE-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reversible reaction associated=3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
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{{#set: common name=farnesyltranstransferase}}
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{{#set: common name=geranylgeranyl_pyrophosphate_synthase}}
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{{#set: ec number=EC-2.5.1.29}}
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{{#set: gene associated=Tiso_gene_7305|Tiso_gene_16284}}
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{{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7720|PWY-7721|PWY-7517}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:45, 18 March 2018

Metabolite DEHYDROQUINATE

  • smiles:
    • C1(C(O)C(O)C(=O)CC(O)(C([O-])=O)1)
  • inchi key:
    • InChIKey=WVMWZWGZRAXUBK-SYTVJDICSA-M
  • common name:
    • 3-dehydroquinate
  • molecular weight:
    • 189.144
  • Synonym(s):
    • 3-dehydroquinic acid
    • 5-dehydroquinic acid
    • 5-dehydroquinate
    • 5-de-H-quinate
    • rel-(1R,3R,4S)-1,3,4-trihydroxy-5-oxocyclohexanecarboxylate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C1(C(O)C(O)C(=O)CC(O)(C([O-])=O)1)" cannot be used as a page name in this wiki.




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