Difference between revisions of "AODAA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_s...")
(Created page with "Category:Gene == Gene Tiso_gene_5449 == * left end position: ** 11253 * transcription direction: ** POSITIVE * right end position: ** 13438 * centisome position: ** 83.603...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
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== Gene Tiso_gene_5449 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 11253
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* common name:
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* transcription direction:
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** carbamoyl_phosphate_synthetase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
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** 13438
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* centisome position:
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** 83.60327   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ACYLCOADEHYDROG-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[HCO3]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 H2O[c] '''+''' 1 hydrogencarbonate[c] '''+''' 2 ATP[c] '''+''' 1 L-glutamine[c] '''=>''' 1 phosphate[c] '''+''' 2 ADP[c] '''+''' 2 H+[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 1 L-glutamate[c]
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* [[RXN-17775]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-17779]]
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* [[Tiso_gene_4685]]
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***automated-name-match
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***AUTOMATED-NAME-MATCH
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* [[RXN-17783]]
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** [[pantograph]]-[[esiliculosus]]
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** in-silico_annotation
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* [[Tiso_gene_4976]]
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***automated-name-match
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** IN-SILICO_ANNOTATION
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* [[RXN-17784]]
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***EC-NUMBER
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** in-silico_annotation
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* [[Tiso_gene_4975]]
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***automated-name-match
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** IN-SILICO_ANNOTATION
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* [[RXN-17788]]
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***EC-NUMBER
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***automated-name-match
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***AUTOMATED-NAME-MATCH
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* [[RXN-17792]]
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== Pathways  ==
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** in-silico_annotation
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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***automated-name-match
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-17796]]
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
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** in-silico_annotation
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** '''7''' reactions found over '''9''' reactions in the full pathway
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***automated-name-match
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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== Pathways associated ==
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[FAO-PWY]]
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=11253}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: right end position=13438}}
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** [http://www.uniprot.org/uniprot/P08955 P08955]
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{{#set: centisome position=83.60327    }}
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** [http://www.uniprot.org/uniprot/P13258 P13258]
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{{#set: reaction associated=ACYLCOADEHYDROG-RXN|RXN-17775|RXN-17779|RXN-17783|RXN-17784|RXN-17788|RXN-17792|RXN-17796}}
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** [http://www.uniprot.org/uniprot/P38099 P38099]
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{{#set: pathway associated=FAO-PWY}}
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** [http://www.uniprot.org/uniprot/P27708 P27708]
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** [http://www.uniprot.org/uniprot/Q91437 Q91437]
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** [http://www.uniprot.org/uniprot/O28994 O28994]
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** [http://www.uniprot.org/uniprot/P57689 P57689]
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** [http://www.uniprot.org/uniprot/P38098 P38098]
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** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
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** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
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** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
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** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
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** [http://www.uniprot.org/uniprot/P25993 P25993]
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** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
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** [http://www.uniprot.org/uniprot/P25994 P25994]
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** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
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** [http://www.uniprot.org/uniprot/O25577 O25577]
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** [http://www.uniprot.org/uniprot/P52557 P52557]
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** [http://www.uniprot.org/uniprot/P46537 P46537]
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** [http://www.uniprot.org/uniprot/P18185 P18185]
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** [http://www.uniprot.org/uniprot/P07259 P07259]
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** [http://www.uniprot.org/uniprot/P20054 P20054]
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** [http://www.uniprot.org/uniprot/P05990 P05990]
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** [http://www.uniprot.org/uniprot/P14845 P14845]
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
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** [http://www.uniprot.org/uniprot/Q92115 Q92115]
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** [http://www.uniprot.org/uniprot/Q09794 Q09794]
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** [http://www.uniprot.org/uniprot/P03965 P03965]
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** [http://www.uniprot.org/uniprot/P07258 P07258]
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** [http://www.uniprot.org/uniprot/P00968 P00968]
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** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
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** [http://www.uniprot.org/uniprot/P93345 P93345]
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** [http://www.uniprot.org/uniprot/Q27732 Q27732]
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** [http://www.uniprot.org/uniprot/Q27448 Q27448]
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** [http://www.uniprot.org/uniprot/O50236 O50236]
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** [http://www.uniprot.org/uniprot/O94313 O94313]
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** [http://www.uniprot.org/uniprot/Q59968 Q59968]
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** [http://www.uniprot.org/uniprot/Q59969 Q59969]
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** [http://www.uniprot.org/uniprot/O50301 O50301]
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** [http://www.uniprot.org/uniprot/O50302 O50302]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: ec number=EC-6.3.5.5}}
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{{#set: gene associated=Tiso_gene_4685|Tiso_gene_4976|Tiso_gene_4975}}
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{{#set: in pathway=ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7400|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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−
{{#set: reconstruction source=primary_network}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:47, 18 March 2018

Gene Tiso_gene_5449

  • left end position:
    • 11253
  • transcription direction:
    • POSITIVE
  • right end position:
    • 13438
  • centisome position:
    • 83.60327
  • Synonym(s):

Reactions associated

  • ACYLCOADEHYDROG-RXN
    • in-silico_annotation
      • automated-name-match
  • RXN-17775
    • in-silico_annotation
      • automated-name-match
  • RXN-17779
    • in-silico_annotation
      • automated-name-match
  • RXN-17783
    • in-silico_annotation
      • automated-name-match
  • RXN-17784
    • in-silico_annotation
      • automated-name-match
  • RXN-17788
    • in-silico_annotation
      • automated-name-match
  • RXN-17792
    • in-silico_annotation
      • automated-name-match
  • RXN-17796
    • in-silico_annotation
      • automated-name-match

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=AODAA&oldid=26819"