Difference between revisions of "RXN-12750"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tra...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Transmembrane_protein
+
** polyketide_synthase
−
** inorganic_pyrophosphatase
+
−
** ORF
+
−
** h+-translocating_pyrophosphatase
+
−
** Inorganic pyrophosphatase
+
−
** mitochondrial_carrier_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
+
** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
+
** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6277]]
+
* [[Tiso_gene_6884]]
−
** [[pantograph]]-[[esiliculosus]]
+
** EXPERIMENTAL_ANNOTATION
−
* [[Tiso_gene_2851]]
+
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_13394]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_2850]]
+
* [[Tiso_gene_500]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_16197]]
+
* [[Tiso_gene_135]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* [[Tiso_gene_136]]
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9490]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* [[Tiso_gene_10876]]
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_16375]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17878]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_7014]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_15874]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17879]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1110]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_17889]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
+
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21616 P21616]
+
** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
−
** [http://www.uniprot.org/uniprot/P31414 P31414]
+
** [http://www.uniprot.org/uniprot/P45159 P45159]
−
** [http://www.uniprot.org/uniprot/P28239 P28239]
+
−
** [http://www.uniprot.org/uniprot/P37980 P37980]
+
−
** [http://www.uniprot.org/uniprot/P84491 P84491]
+
−
** [http://www.uniprot.org/uniprot/O59570 O59570]
+
−
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
+
−
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
+
−
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
+
−
** [http://www.uniprot.org/uniprot/O26363 O26363]
+
−
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
+
−
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
+
−
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
+
−
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
+
−
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
+
−
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
+
−
** [http://www.uniprot.org/uniprot/P47593 P47593]
+
−
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
+
−
** [http://www.uniprot.org/uniprot/O05724 O05724]
+
−
** [http://www.uniprot.org/uniprot/P19514 P19514]
+
−
** [http://www.uniprot.org/uniprot/P00817 P00817]
+
−
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
+
−
** [http://www.uniprot.org/uniprot/P13998 P13998]
+
−
** [http://www.uniprot.org/uniprot/P19117 P19117]
+
−
** [http://www.uniprot.org/uniprot/P21216 P21216]
+
−
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
+
−
** [http://www.uniprot.org/uniprot/P37981 P37981]
+
−
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
+
−
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
+
−
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
+
−
** [http://www.uniprot.org/uniprot/P50308 P50308]
+
−
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
+
−
** [http://www.uniprot.org/uniprot/P93409 P93409]
+
−
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
+
−
** [http://www.uniprot.org/uniprot/P93410 P93410]
+
−
** [http://www.uniprot.org/uniprot/P75250 P75250]
+
−
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
+
−
** [http://www.uniprot.org/uniprot/O48556 O48556]
+
−
** [http://www.uniprot.org/uniprot/O22537 O22537]
+
−
** [http://www.uniprot.org/uniprot/O82793 O82793]
+
−
** [http://www.uniprot.org/uniprot/O23979 O23979]
+
−
** [http://www.uniprot.org/uniprot/O49949 O49949]
+
−
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
+
−
** [http://www.uniprot.org/uniprot/O22124 O22124]
+
−
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
+
−
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
+
−
** [http://www.uniprot.org/uniprot/O65151 O65151]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Transmembrane_protein}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=inorganic_pyrophosphatase}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: common name=h+-translocating_pyrophosphatase}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: common name=Inorganic pyrophosphatase}}
+
{{#set: gene associated=Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_135|Tiso_gene_136|Tiso_gene_10876}}
−
{{#set: common name=mitochondrial_carrier_protein}}
+
{{#set: in pathway=FASYN-ELONG-PWY}}
−
{{#set: ec number=EC-3.6.1.1}}
+
−
{{#set: gene associated=Tiso_gene_6277|Tiso_gene_2851|Tiso_gene_2850|Tiso_gene_16197|Tiso_gene_9490|Tiso_gene_16375|Tiso_gene_17878|Tiso_gene_7014|Tiso_gene_15874|Tiso_gene_17879|Tiso_gene_1110|Tiso_gene_17889}}
+
−
{{#set: in pathway=PWY-7805|PWY-7807}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 19:49, 18 March 2018

Reaction 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] => 1 H2O[c] + 1 a trans-2-enoyl-[acyl-carrier protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12750&oldid=27103"