Difference between revisions of "Tiso gene 5446"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5462 RXN-5462] == * direction: ** LEFT-TO-RIGHT * common name: ** vacuolar_protein_sorting-asso...")
(Created page with "Category:Gene == Gene Tiso_gene_7966 == * left end position: ** 203 * transcription direction: ** NEGATIVE * right end position: ** 10515 * centisome position: ** 1.905208...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5462 RXN-5462] ==
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== Gene Tiso_gene_7966 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 203
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* common name:
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* transcription direction:
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** vacuolar_protein_sorting-associated_protein_51_homolog
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** NEGATIVE
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** ORF
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* right end position:
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* ec number:
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** 10515
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** [http://enzyme.expasy.org/EC/2.4.1.132 EC-2.4.1.132]
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* centisome position:
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** 1.9052088   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[13-BETA-GLUCAN-SYNTHASE-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''+''' 1 [[ALPHA-D-MANNOSYLCHITOBIO]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[CPD-5161]][c]
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** experimental_annotation
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* With common name(s):
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***automated-name-match
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** 1 GDP-α-D-mannose[c] '''+''' 1 β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''=>''' 1 H+[c] '''+''' 1 GDP[c] '''+''' 1 α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-1224]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_16872]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10734]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[RXN-15117]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** [[pantograph]]-[[athaliana]]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Pathways associated ==
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== Reconstruction information  ==
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* [[PWY-7817]]
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* [[orthology]]:
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* [[PWY-6773]]
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** [[pantograph]]:
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* [[PWYQT-4427]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=203}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29518 29518]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=10515}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05973 R05973]
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{{#set: centisome position=1.9052088    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05002 R05002]
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{{#set: reaction associated=13-BETA-GLUCAN-SYNTHASE-RXN|RXN-1224|RXN-15117}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-7817|PWY-6773|PWYQT-4427}}
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{{#set: common name=vacuolar_protein_sorting-associated_protein_51_homolog}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.4.1.132}}
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{{#set: gene associated=Tiso_gene_16872|Tiso_gene_10734}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:49, 18 March 2018

Gene Tiso_gene_7966

  • left end position:
    • 203
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 10515
  • centisome position:
    • 1.9052088
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5446&oldid=27117"