Difference between revisions of "RXN0-5021"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15568 CPD-15568] == * smiles: ** CCCCCCCCCCCC=CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_prot...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15568 CPD-15568] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCC=CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=MBCVYCOKMMMWLX-YYMFEJJQSA-J
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* common name:
 
* common name:
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** 2-trans-tetradecenoyl-CoA
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** 5_deoxy_cytosolic_type_c_protein
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* molecular weight:
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** 5_-nucleotidase
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** 971.845   
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** (2E)-tetradecenoyl-CoA
 
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** trans-tetradec-2-enoyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-14131]]
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** 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GUANOSINE]][c]
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* [[ACOA140or]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 GMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 guanosine[c]
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 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14435]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5911]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13929]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6640]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14246]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14434]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6988]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_9166]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C05273 C05273]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61405 61405]
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** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
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* METABOLIGHTS : MTBLC61405
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46173185 46173185]
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{{#set: common name=5_-nucleotidase}}
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* HMDB : HMDB03946
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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{{#set: smiles=CCCCCCCCCCCC=CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O}}
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{{#set: common name=ORF}}
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{{#set: inchi key=InChIKey=MBCVYCOKMMMWLX-YYMFEJJQSA-J}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: common name=2-trans-tetradecenoyl-CoA}}
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{{#set: gene associated=Tiso_gene_14435|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_6640|Tiso_gene_14246|Tiso_gene_14434|Tiso_gene_6988|Tiso_gene_9166}}
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{{#set: molecular weight=971.845    }}
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{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
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{{#set: common name=(2E)-tetradecenoyl-CoA|trans-tetradec-2-enoyl-CoA}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: produced by=RXN-14131|ACOA140or}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:50, 18 March 2018

Reaction RXN-7609

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • 5_-nucleotidase
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GMP[c] + 1 H2O[c] => 1 phosphate[c] + 1 guanosine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5021&oldid=27219"