Difference between revisions of "OROTPDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] == * smiles: ** C[N+]CC(=O)[O-] * inchi key: ** InChIKey=FSYKKLYZXJSNPZ-UH...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C[N+]CC(=O)[O-]
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* inchi key:
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** InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N
 
* common name:
 
* common name:
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** polyketide_synthase
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** sarcosine
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 89.094   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
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** N-methylglycine
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN66-577]]
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** 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* [[SARCOSINE-DEHYDROGENASE-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 a (3R)-3-hydroxydodecanoyl-[acp][c] '''=>''' 1 a (2E)-dodec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* [[RXN66-576]]
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== Genes associated with this reaction  ==
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* [[CREATINASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7664]], oleate biosynthesis IV (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 107-97-1
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{{#set: common name=polyketide_synthase}}
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* METABOLIGHTS : MTBLC57433
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{{#set: ec number=EC-2.3.1.86}}
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* PUBCHEM:
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{{#set: ec number=EC-2.3.1.85}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7311726 7311726]
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{{#set: ec number=EC-4.2.1.59}}
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* HMDB : HMDB00271
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_500|Tiso_gene_136|Tiso_gene_6884|Tiso_gene_135|Tiso_gene_10876}}
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* LIGAND-CPD:
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{{#set: in pathway=PWY-5994|PWY-5971|PWY-7664}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00213 C00213]
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{{#set: reconstruction category=manual}}
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* CHEBI:
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{{#set: reconstruction source=primary_network}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57433 57433]
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{{#set: reconstruction category=annotation}}
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* BIGG : sarcs
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: smiles=C[N+]CC(=O)[O-]}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: inchi key=InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N}}
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{{#set: common name=sarcosine}}
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{{#set: molecular weight=89.094    }}
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{{#set: common name=N-methylglycine}}
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{{#set: consumed by=RXN66-577|SARCOSINE-DEHYDROGENASE-RXN}}
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{{#set: produced by=DIMETHYLGLYCINE-DEHYDROGENASE-RXN|RXN66-576|CREATINASE-RXN}}

Revision as of 18:50, 18 March 2018

Metabolite SARCOSINE

  • smiles:
    • C[N+]CC(=O)[O-]
  • inchi key:
    • InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N
  • common name:
    • sarcosine
  • molecular weight:
    • 89.094
  • Synonym(s):
    • N-methylglycine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 107-97-1
  • METABOLIGHTS : MTBLC57433
  • PUBCHEM:
  • HMDB : HMDB00271
  • LIGAND-CPD:
  • CHEBI:
  • BIGG : sarcs
"C[N+]CC(=O)[O-" cannot be used as a page name in this wiki.




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