Difference between revisions of "TRNA-URACIL-5--METHYLTRANSFERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:Gene == Gene Tiso_gene_13075 == * left end position: ** 1571 * transcription direction: ** NEGATIVE * right end position: ** 6035 * centisome position: ** 23.9847...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] ==
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== Gene Tiso_gene_13075 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1571
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
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** NEGATIVE
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* right end position:
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** 6035
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* centisome position:
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** 23.984734   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[NADH-DEHYDROG-A-RXN]]
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** 1 [[CPD-676]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[CAFFEOYL-COA]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 trans-caffeate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 trans-caffeoyl-CoA[c]
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== Pathways associated ==
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* [[PWY-4302]]
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== Genes associated with this reaction  ==
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* [[PWY-3781]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6692]]
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* [[Tiso_gene_12275]]
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* [[PWY0-1334]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY0-1335]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5083]]
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* [[Tiso_gene_14183]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6673]], caffeoylglucarate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6673 PWY-6673]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=1571}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01943 R01943]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=6035}}
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{{#set: ec number=EC-6.2.1.12}}
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{{#set: centisome position=23.984734    }}
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{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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{{#set: in pathway=PWY-1121|PWY-7398|PWY-6673}}
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{{#set: pathway associated=PWY-4302|PWY-3781|PWY-6692|PWY0-1334|PWY0-1335|PWY-5083}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 18:50, 18 March 2018

Gene Tiso_gene_13075

  • left end position:
    • 1571
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6035
  • centisome position:
    • 23.984734
  • Synonym(s):

Reactions associated

Pathways associated

External links

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