Difference between revisions of "RXN-3521"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutas...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SACCHAROPINE SACCHAROPINE] == * smiles: ** C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O *...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SACCHAROPINE SACCHAROPINE] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O
 +
* inchi key:
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** InChIKey=ZDGJAHTZVHVLOT-YUMQZZPRSA-M
 
* common name:
 
* common name:
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** phosphoglycerate_mutase
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** L-saccharopine
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** bisphosphoglycerate-dependent_phosphoglycerate_mutase
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* molecular weight:
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** ORF
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** 275.281   
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** plastid_phosphoglycerate_mutase_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
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* Synonym(s):
 
* Synonym(s):
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** saccharopine
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** N6-(L-1,3-dicarboxypropyl)-L-lysine
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** ε-N-(L-glutar-2-yl)-L-lysine
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[1.5.1.7-RXN]]
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** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
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* [[1.5.1.9-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
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* [[1.5.1.8-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7201]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9922]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_20311]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15391]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14664]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2841]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9923]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15048]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14530]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2365]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10516]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14212]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_16754]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_5468]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_2667]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_16271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
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** [http://www.genome.jp/dbget-bin/www_bget?C00449 C00449]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57951 57951]
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* UNIPROT:
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* METABOLIGHTS : MTBLC57951
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** [http://www.uniprot.org/uniprot/P30792 P30792]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P52832 P52832]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791954 49791954]
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** [http://www.uniprot.org/uniprot/P44865 P44865]
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* HMDB : HMDB00279
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** [http://www.uniprot.org/uniprot/P30798 P30798]
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{{#set: smiles=C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O}}
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** [http://www.uniprot.org/uniprot/P62707 P62707]
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{{#set: inchi key=InChIKey=ZDGJAHTZVHVLOT-YUMQZZPRSA-M}}
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** [http://www.uniprot.org/uniprot/P39773 P39773]
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{{#set: common name=L-saccharopine}}
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** [http://www.uniprot.org/uniprot/P47669 P47669]
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{{#set: molecular weight=275.281    }}
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** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
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{{#set: common name=saccharopine|N6-(L-1,3-dicarboxypropyl)-L-lysine|&epsilon;-N-(L-glutar-2-yl)-L-lysine}}
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** [http://www.uniprot.org/uniprot/P56196 P56196]
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{{#set: consumed by=1.5.1.7-RXN|1.5.1.9-RXN}}
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** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
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{{#set: produced by=1.5.1.8-RXN}}
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** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
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** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
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** [http://www.uniprot.org/uniprot/P00950 P00950]
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** [http://www.uniprot.org/uniprot/P18669 P18669]
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** [http://www.uniprot.org/uniprot/P15259 P15259]
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** [http://www.uniprot.org/uniprot/P16290 P16290]
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** [http://www.uniprot.org/uniprot/P35167 P35167]
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** [http://www.uniprot.org/uniprot/P33158 P33158]
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** [http://www.uniprot.org/uniprot/Q06464 Q06464]
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** [http://www.uniprot.org/uniprot/P36623 P36623]
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** [http://www.uniprot.org/uniprot/P35494 P35494]
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** [http://www.uniprot.org/uniprot/P37689 P37689]
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** [http://www.uniprot.org/uniprot/P35493 P35493]
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** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
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** [http://www.uniprot.org/uniprot/Q42908 Q42908]
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** [http://www.uniprot.org/uniprot/Q12326 Q12326]
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** [http://www.uniprot.org/uniprot/P53531 P53531]
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** [http://www.uniprot.org/uniprot/P51379 P51379]
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** [http://www.uniprot.org/uniprot/P75167 P75167]
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** [http://www.uniprot.org/uniprot/P72649 P72649]
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** [http://www.uniprot.org/uniprot/P74507 P74507]
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** [http://www.uniprot.org/uniprot/Q49006 Q49006]
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** [http://www.uniprot.org/uniprot/O24246 O24246]
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** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=phosphoglycerate_mutase}}
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{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
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{{#set: common name=ORF}}
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{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
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{{#set: ec number=EC-5.4.2.12}}
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−
{{#set: gene associated=Tiso_gene_7201|Tiso_gene_9922|Tiso_gene_20311|Tiso_gene_15391|Tiso_gene_14664|Tiso_gene_2841|Tiso_gene_9923|Tiso_gene_15048|Tiso_gene_14530|Tiso_gene_2365|Tiso_gene_10516|Tiso_gene_14212|Tiso_gene_16754|Tiso_gene_5468|Tiso_gene_2667|Tiso_gene_16271}}
+
−
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
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−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:56, 18 March 2018

Metabolite SACCHAROPINE

  • smiles:
    • C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O
  • inchi key:
    • InChIKey=ZDGJAHTZVHVLOT-YUMQZZPRSA-M
  • common name:
    • L-saccharopine
  • molecular weight:
    • 275.281
  • Synonym(s):
    • saccharopine
    • N6-(L-1,3-dicarboxypropyl)-L-lysine
    • ε-N-(L-glutar-2-yl)-L-lysine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC57951
  • PUBCHEM:
  • HMDB : HMDB00279
"C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O" cannot be used as a page name in this wiki.




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