Difference between revisions of "Tiso gene 5563"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1281 RXN0-1281] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydrouridine synthase **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] == * smiles: ** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1281 RXN0-1281] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
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* inchi key:
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** InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
 
* common name:
 
* common name:
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** dihydrouridine synthase
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** 1-(5-phospho-β-D-ribosyl)-AMP
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** trna-dihydrouridine_synthase
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* molecular weight:
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* ec number:
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** 555.288   
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** [http://enzyme.expasy.org/EC/1.1.1 EC-1.1.1]
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* Synonym(s):
 
* Synonym(s):
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** 1-(5-phosphoribosyl)-AMP
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** phosphoribosyl-AMP
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** 5-phosphoribosyl-AMP
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** N-(5-phospho-D-ribosyl)-AMP
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** N-(5'-phospho-D-ribosyl)-AMP
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** N1-(5-phospho-D-ribosyl)-AMP
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[HISTCYCLOHYD-RXN]]
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** 1 [[tRNA-uridines]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[tRNA-Dihydrouridines]][c] '''+''' 1 [[NADP]][c]
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* [[PRACH]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 a uridine in tRNA[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 a 5,6-dihydrouridine in tRNA[c] '''+''' 1 NADP+[c]
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* [[HISTPRATPHYD-RXN]]
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* [[PRADP]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8242]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_7714]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_12147]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15285]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15154]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15890]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5731]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15286]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_8241]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15416]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4505]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=dihydrouridine synthase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02741 C02741]
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{{#set: common name=trna-dihydrouridine_synthase}}
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* CHEBI:
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{{#set: ec number=EC-1.1.1}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59457 59457]
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{{#set: gene associated=Tiso_gene_8242|Tiso_gene_7714|Tiso_gene_12147|Tiso_gene_15285|Tiso_gene_15154|Tiso_gene_15890|Tiso_gene_5731|Tiso_gene_15286|Tiso_gene_8241|Tiso_gene_15416|Tiso_gene_4505}}
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* BIGG : prbamp
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{{#set: in pathway=}}
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* PUBCHEM:
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{{#set: reconstruction category=orthology}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45480652 45480652]
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{{#set: reconstruction tool=pantograph}}
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* HMDB : HMDB12276
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{{#set: reconstruction source=esiliculosus}}
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{{#set: smiles=C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O}}
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{{#set: reconstruction category=annotation}}
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{{#set: inchi key=InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=1-(5-phospho-β-D-ribosyl)-AMP}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: molecular weight=555.288    }}
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{{#set: common name=1-(5-phosphoribosyl)-AMP|phosphoribosyl-AMP|5-phosphoribosyl-AMP|N-(5-phospho-D-ribosyl)-AMP|N-(5'-phospho-D-ribosyl)-AMP|N1-(5-phospho-D-ribosyl)-AMP}}
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{{#set: consumed by=HISTCYCLOHYD-RXN|PRACH}}
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{{#set: produced by=HISTPRATPHYD-RXN|PRADP}}

Revision as of 18:58, 18 March 2018

Metabolite PHOSPHORIBOSYL-AMP

  • smiles:
    • C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
  • inchi key:
    • InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
  • common name:
    • 1-(5-phospho-β-D-ribosyl)-AMP
  • molecular weight:
    • 555.288
  • Synonym(s):
    • 1-(5-phosphoribosyl)-AMP
    • phosphoribosyl-AMP
    • 5-phosphoribosyl-AMP
    • N-(5-phospho-D-ribosyl)-AMP
    • N-(5'-phospho-D-ribosyl)-AMP
    • N1-(5-phospho-D-ribosyl)-AMP

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O" cannot be used as a page name in this wiki.




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