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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=tRNA-uridine-38-40 tRNA-uridine-38-40] == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| | * common name: | | * common name: |
| − | ** Magnesium chelatase, H subunit | + | ** a uridine38-40 in tRNA |
| − | ** h_subunit_of_mg_chelatase
| + | |
| − | ** magnesium_chelatase
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** a tRNA uridine38-40 |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | * [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]] |
| − | ** 1 [[MG+2]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''=>''' 1 [[Pi]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c]
| + | == Reaction(s) known to produce the compound == |
| − | * With common name(s):
| + | == Reaction(s) of unknown directionality == |
| − | ** 1 Mg2+[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''+''' 1 protoporphyrin IX[c] '''=>''' 1 phosphate[c] '''+''' 3 H+[c] '''+''' 1 ADP[c] '''+''' 1 Mg-protoporphyrin[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction == | + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_5993]] | + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***AUTOMATED-NAME-MATCH
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_9870]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_11960]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
| + | |
| − | ** '''4''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
| + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information == | + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[athaliana]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: common name=a uridine38-40 in tRNA}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
| + | {{#set: common name=a tRNA uridine38-40}} |
| − | * LIGAND-RXN:
| + | {{#set: consumed by=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}}
| + | |
| − | {{#set: common name=Magnesium chelatase, H subunit}} | + | |
| − | {{#set: common name=h_subunit_of_mg_chelatase}} | + | |
| − | {{#set: common name=magnesium_chelatase}}
| + | |
| − | {{#set: ec number=EC-6.6.1.1}}
| + | |
| − | {{#set: gene associated=Tiso_gene_5993|Tiso_gene_9870|Tiso_gene_11960}} | + | |
| − | {{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
| + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=athaliana|esiliculosus}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
