Difference between revisions of "R163-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7968 RXN-7968] == * direction: ** LEFT-TO-RIGHT * common name: ** pentafunctional_protein * ec...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5499 PWY-5499] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-12...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7968 RXN-7968] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5499 PWY-5499] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
 
* common name:
 
* common name:
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** pentafunctional_protein
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** vitamin B6 degradation
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.282 EC-1.1.1.282]
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* Synonym(s):
 
* Synonym(s):
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** pyridoxine degradation
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** pyridoxamine degradation
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** pyridoxal degradation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''9''' reactions in the full pathway
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** 1 [[SHIKIMATE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
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* [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 shikimate[c] '''+''' 1 NAD(P)+[c] '''=>''' 1 3-dehydroshikimate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_13083]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_6340]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_5752]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_5753]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.12.4-RXN 1.14.12.4-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.30-RXN 2.6.1.30-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.29-RXN 3.5.1.29-RXN]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4-PYRIDOXOLACTONASE-RXN 4-PYRIDOXOLACTONASE-RXN]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.1.51-RXN 4.1.1.51-RXN]
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-4-OXIDASE-RXN PYRIDOXINE-4-OXIDASE-RXN]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8756 RXN-8756]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8757 RXN-8757]
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17744 17744]
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{{#set: common name=vitamin B6 degradation}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pyridoxine degradation|pyridoxamine degradation|pyridoxal degradation}}
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{{#set: common name=pentafunctional_protein}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-1.1.1.282}}
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{{#set: total reaction=9}}
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{{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}}
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{{#set: completion rate=11.0}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 00:24, 19 March 2018

Pathway PWY-5499

  • taxonomic range:
  • common name:
    • vitamin B6 degradation
  • Synonym(s):
    • pyridoxine degradation
    • pyridoxamine degradation
    • pyridoxal degradation

Reaction(s) found

1 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R163-RXN&oldid=28315"