Difference between revisions of "SPERMIDINESYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE] == * smiles: ** C(OP([...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 3-is...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
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* smiles:
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* direction:
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** C(OP([O-])([O-])=O)C2(C(O)C(O)C(N1(C(N)=C(C(=O)NC(C([O-])=O)CC([O-])=O)N=C1))O2)
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** REVERSIBLE
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* inchi key:
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** InChIKey=NAQGHJTUZRHGAC-LBGUGVGYSA-J
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* common name:
 
* common name:
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** 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
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** 3-isopropylmalate dehydratase
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* molecular weight:
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** ORF
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** 450.255   
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* Synonym(s):
 
* Synonym(s):
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** (S)-2-[5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** 1-(5-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole
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** β-isopropylmalate dehydratase
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** 5'-P-ribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
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** α-isopropylmalate isomerase
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** 5'-p-Ribosyl-4-(N-succinocarboxamide)-5-amino imidazole
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** 3-isopropylmalate hydro-lyase
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** 1-(5'-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole
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** SAICAR
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[SAICARSYN-RXN]]
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** 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[AIAL]]
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** 1 2-isopropylmaleate[c] '''+''' 1 H2O[c] '''<=>''' 1 (2S)-2-isopropylmalate[c]
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* [[AICARSYN-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_12778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* BIGG : 25aics
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16293 16293]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266647 45266647]
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* LIGAND-RXN:
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* HMDB : HMDB00797
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C04823 C04823]
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58443 58443]
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** [http://www.uniprot.org/uniprot/P80858 P80858]
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* METABOLIGHTS : MTBLC58443
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
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{{#set: smiles=C(OP([O-])([O-])=O)C2(C(O)C(O)C(N1(C(N)=C(C(=O)NC(C([O-])=O)CC([O-])=O)N=C1))O2)}}
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
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{{#set: inchi key=InChIKey=NAQGHJTUZRHGAC-LBGUGVGYSA-J}}
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
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{{#set: common name=5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole}}
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
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{{#set: molecular weight=450.255    }}
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** [http://www.uniprot.org/uniprot/P44968 P44968]
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{{#set: common name=(S)-2-[5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate|1-(5-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole|5'-P-ribosyl-4-(N-succinocarboxamide)-5-aminoimidazole|5'-p-Ribosyl-4-(N-succinocarboxamide)-5-amino imidazole|1-(5'-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole|SAICAR}}
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
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{{#set: produced by=SAICARSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P44438 P44438]
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{{#set: consumed or produced by=AIAL|AICARSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
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** [http://www.uniprot.org/uniprot/P17279 P17279]
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** [http://www.uniprot.org/uniprot/P04787 P04787]
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** [http://www.uniprot.org/uniprot/P15717 P15717]
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** [http://www.uniprot.org/uniprot/P18250 P18250]
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
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** [http://www.uniprot.org/uniprot/P30126 P30126]
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** [http://www.uniprot.org/uniprot/P50181 P50181]
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** [http://www.uniprot.org/uniprot/P07264 P07264]
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** [http://www.uniprot.org/uniprot/P74207 P74207]
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** [http://www.uniprot.org/uniprot/O86534 O86534]
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** [http://www.uniprot.org/uniprot/O86535 O86535]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=ORF}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 23:43, 18 March 2018

Reaction 3-ISOPROPYLMALISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydratase
    • ORF
  • Synonym(s):
    • (2R,3S)-3-isopropylmalate hydro-lyase
    • β-isopropylmalate dehydratase
    • α-isopropylmalate isomerase
    • 3-isopropylmalate hydro-lyase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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