Difference between revisions of "Tiso gene 416"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2541 RXN-2541] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Gene == Gene Tiso_gene_11850 == * left end position: ** 5768 * transcription direction: ** NEGATIVE * right end position: ** 7441 * centisome position: ** 77.1019...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2541 RXN-2541] ==
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== Gene Tiso_gene_11850 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5768
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.115 EC-2.5.1.115]
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** NEGATIVE
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* right end position:
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** 7441
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* centisome position:
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** 77.10199   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[2.1.1.143-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PHYTYL-PYROPHOSPHATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[MPBQ]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 H+[c] '''+''' 1 homogentisate[c] '''+''' 1 phytyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 CO2[c] '''+''' 1 2-methyl-6-phytyl-1,4-benzoquinol[c]
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* [[RXN-4021]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13582]]
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** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways associated ==
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-2541]]
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== Pathways ==
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* [[PWY-7155]]
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=5768}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07500 R07500]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=7441}}
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{{#set: ec number=EC-2.5.1.115}}
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{{#set: centisome position=77.10199    }}
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{{#set: gene associated=Tiso_gene_13582}}
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{{#set: reaction associated=2.1.1.143-RXN|RXN-4021}}
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{{#set: in pathway=PWY-1422}}
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{{#set: pathway associated=PWY-2541|PWY-7155}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana}}
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Revision as of 01:02, 19 March 2018

Gene Tiso_gene_11850

  • left end position:
    • 5768
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 7441
  • centisome position:
    • 77.10199
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_416&oldid=28389"