Difference between revisions of "PPGPPSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-366 RXN0-366] == * direction: ** LEFT-TO-RIGHT * common name: ** guanosine hydrolase ** nucleo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carotenoid_isomeras...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-366 RXN0-366] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** guanosine hydrolase
+
** carotenoid_isomerase
−
** nucleoside_hydrolase
+
** carotene_isomerase
 +
** fad_nad_-binding_oxidoreductase_domain-containing_protein
 +
** carotenoid_isomerase-like_protein
 +
** all-trans-_-dihydroretinol_saturase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.2.1 EC-3.2.2.1]
+
** [http://enzyme.expasy.org/EC/1.3.99.23 EC-1.3.99.23]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[GUANOSINE]][c] '''=>''' 1 [[GUANINE]][c] '''+''' 1 [[D-Ribofuranose]][c]
+
** 1 [[Donor-H2]][c] '''+''' 1 [[CPD-13524]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CPD-7247]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 guanosine[c] '''=>''' 1 guanine[c] '''+''' 1 D-ribofuranose[c]
+
** 1 a reduced electron acceptor[c] '''+''' 1 all-trans-retinol[c] '''=>''' 1 an oxidized electron acceptor[c] '''+''' 1 all-trans-13,14-dihydroretinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12995]]
+
* [[Tiso_gene_16795]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_11910]]
+
* [[Tiso_gene_9534]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_917]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3092]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13369]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13367]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_16794]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6599]], guanine and guanosine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6599 PWY-6599]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30774 30774]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19193 19193]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01677 R01677]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07163 R07163]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=guanosine hydrolase}}
+
{{#set: common name=carotenoid_isomerase}}
−
{{#set: common name=nucleoside_hydrolase}}
+
{{#set: common name=carotene_isomerase}}
−
{{#set: ec number=EC-3.2.2.1}}
+
{{#set: common name=fad_nad_-binding_oxidoreductase_domain-containing_protein}}
−
{{#set: gene associated=Tiso_gene_12995|Tiso_gene_11910}}
+
{{#set: common name=carotenoid_isomerase-like_protein}}
−
{{#set: in pathway=PWY-6599|PWY-6606}}
+
{{#set: common name=all-trans-_-dihydroretinol_saturase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.3.99.23}}
 +
{{#set: gene associated=Tiso_gene_16795|Tiso_gene_9534|Tiso_gene_917|Tiso_gene_3092|Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_16794}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 00:02, 19 March 2018

Reaction 1.3.99.23-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotenoid_isomerase
    • carotene_isomerase
    • fad_nad_-binding_oxidoreductase_domain-containing_protein
    • carotenoid_isomerase-like_protein
    • all-trans-_-dihydroretinol_saturase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced electron acceptor[c] + 1 all-trans-retinol[c] => 1 an oxidized electron acceptor[c] + 1 all-trans-13,14-dihydroretinol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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