Difference between revisions of "CPD-4124"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SACCHAROPINE SACCHAROPINE] == * smiles: ** C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPPYPHOSKIN-RXN GDPPYPHOSKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ppgpp_synthet...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SACCHAROPINE SACCHAROPINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPPYPHOSKIN-RXN GDPPYPHOSKIN-RXN] ==
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* smiles:
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* direction:
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** C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ZDGJAHTZVHVLOT-YUMQZZPRSA-M
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* common name:
 
* common name:
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** L-saccharopine
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** ppgpp_synthetase
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* molecular weight:
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** ca2+-activated_spot-like_protein
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** 275.281   
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** gtp_pyrophosphokinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.6.5 EC-2.7.6.5]
 
* Synonym(s):
 
* Synonym(s):
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** saccharopine
 
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** N6-(L-1,3-dicarboxypropyl)-L-lysine
 
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** ε-N-(L-glutar-2-yl)-L-lysine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[1.5.1.7-RXN]]
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* With identifiers:
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* [[1.5.1.9-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[1.5.1.8-RXN]]
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** 1 ATP[c] '''+''' 1 GDP[c] '''=>''' 1 ppGpp[c] '''+''' 1 AMP[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6799]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16305]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7349]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C00449 C00449]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28098 28098]
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* CHEBI:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57951 57951]
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{{#set: common name=ppgpp_synthetase}}
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* METABOLIGHTS : MTBLC57951
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{{#set: common name=ca2+-activated_spot-like_protein}}
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* PUBCHEM:
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{{#set: common name=gtp_pyrophosphokinase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791954 49791954]
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{{#set: ec number=EC-2.7.6.5}}
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* HMDB : HMDB00279
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{{#set: gene associated=Tiso_gene_6799|Tiso_gene_16305|Tiso_gene_7349}}
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{{#set: smiles=C(CC[N+]C(CCC([O-])=O)C([O-])=O)CC([N+])C([O-])=O}}
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{{#set: in pathway=PPGPPMET-PWY}}
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{{#set: inchi key=InChIKey=ZDGJAHTZVHVLOT-YUMQZZPRSA-M}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: common name=L-saccharopine}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: molecular weight=275.281    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=saccharopine|N6-(L-1,3-dicarboxypropyl)-L-lysine|ε-N-(L-glutar-2-yl)-L-lysine}}
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{{#set: consumed by=1.5.1.7-RXN|1.5.1.9-RXN}}
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{{#set: produced by=1.5.1.8-RXN}}
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Revision as of 00:02, 19 March 2018

Reaction GDPPYPHOSKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ppgpp_synthetase
    • ca2+-activated_spot-like_protein
    • gtp_pyrophosphokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 GDP[c] => 1 ppGpp[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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