Difference between revisions of "CPD-5162"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.5...")
(Created page with "Category:Gene == Gene Tiso_gene_4976 == * left end position: ** 8336 * transcription direction: ** NEGATIVE * right end position: ** 14013 * centisome position: ** 59.1835...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] ==
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== Gene Tiso_gene_4976 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 8336
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1 EC-2.5.1]
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** NEGATIVE
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* right end position:
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** 14013
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* centisome position:
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** 59.183525   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[6.3.4.16-RXN]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''<=>''' 1 [[CPD0-1028]][c] '''+''' 1 [[PPI]][c]
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* With common name(s):
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** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''<=>''' 1 2-cis,6-trans,10-trans-geranylgeranyl diphosphate[c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2848]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10317]]
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8531]]
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* [[CARBPSYN-RXN]]
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** [[pantograph]]-[[athaliana]]
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** in-silico_annotation
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***ec-number
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* [[GLUTAMIN-RXN]]
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** in-silico_annotation
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***ec-number
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11582]]
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* [[RXN-13202]]
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** [[pantograph]]-[[athaliana]]
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** in-silico_annotation
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* [[Tiso_gene_18201]]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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* [[RXN-14196]]
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== Pathways ==
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** in-silico_annotation
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== Reconstruction information  ==
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***ec-number
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* [[orthology]]:
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* [[RXN-16909]]
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** [[pantograph]]:
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** in-silico_annotation
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*** [[esiliculosus]]
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***ec-number
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*** [[athaliana]]
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* [[RXN-16910]]
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** in-silico_annotation
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***ec-number
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== Pathways associated ==
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* [[PWY-4984]]
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* [[GLUTAMINDEG-PWY]]
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* [[ARGSYN-PWY]]
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* [[PWY-5154]]
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* [[PWY-7790]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7400]]
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* [[PWY-7791]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=8336}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31282 31282]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=14013}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05555 R05555]
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{{#set: centisome position=59.183525    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=6.3.4.16-RXN|CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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{{#set: ec number=EC-2.5.1}}
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-7791|PWY-5686|CITRULBIO-PWY}}
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{{#set: gene associated=Tiso_gene_2848|Tiso_gene_10317|Tiso_gene_8531|Tiso_gene_11582|Tiso_gene_18201}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 00:02, 19 March 2018

Gene Tiso_gene_4976

  • left end position:
    • 8336
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 14013
  • centisome position:
    • 59.183525
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-5162&oldid=28435"