Difference between revisions of "UDPGALor"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * ec num...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] == * direction: ** LEFT-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** diphosphomevalonate_decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.9 EC-2.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.1.33 EC-4.1.1.33]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[ACETYL-COA]][c] '''<=>''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[CPD-641]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 acetyl-CoA[c] '''<=>''' 1 acetoacetyl-CoA[c] '''+''' 1 coenzyme A[c]
+
** 1 (R)-mevalonate diphosphate[c] '''+''' 1 ATP[c] '''=>''' 1 isopentenyl diphosphate[c] '''+''' 1 phosphate[c] '''+''' 1 CO2[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15327]]
+
* [[Tiso_gene_4171]]
−
** [[pantograph]]-[[athaliana]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[athaliana]]
+
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[athaliana]]
+
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
* [[Tiso_gene_16181]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_17451]]
 
−
** [[pantograph]]-[[synechocystis]]
 
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
+
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
+
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
−
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
+
−
** '''1''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
+
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
+
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
+
−
** '''8''' reactions found over '''16''' reactions in the full pathway
+
−
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
 
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
** '''6''' reactions found over '''8''' reactions in the full pathway
 
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 
−
** '''5''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
−
** '''5''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
+
** [http://www.uniprot.org/uniprot/P32377 P32377]
−
** [http://www.uniprot.org/uniprot/P41338 P41338]
+
** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
−
** [http://www.uniprot.org/uniprot/P45362 P45362]
+
** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
−
** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
+
** [http://www.uniprot.org/uniprot/O13963 O13963]
−
** [http://www.uniprot.org/uniprot/P45359 P45359]
+
** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
−
** [http://www.uniprot.org/uniprot/P24752 P24752]
+
** [http://www.uniprot.org/uniprot/O23722 O23722]
−
** [http://www.uniprot.org/uniprot/Q12598 Q12598]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P45369 P45369]
+
{{#set: common name=diphosphomevalonate_decarboxylase}}
−
** [http://www.uniprot.org/uniprot/P46707 P46707]
+
{{#set: ec number=EC-4.1.1.33}}
−
** [http://www.uniprot.org/uniprot/P73825 P73825]
+
{{#set: gene associated=Tiso_gene_4171}}
−
** [http://www.uniprot.org/uniprot/Q43637 Q43637]
+
{{#set: in pathway=PWY-922|PWY-7391}}
−
** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P77852 P77852]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
+
−
** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
+
−
** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
+
−
** [http://www.uniprot.org/uniprot/P14611 P14611]
+
−
** [http://www.uniprot.org/uniprot/P07097 P07097]
+
−
** [http://www.uniprot.org/uniprot/P17764 P17764]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.3.1.9}}
+
−
{{#set: gene associated=Tiso_gene_15327|Tiso_gene_16181|Tiso_gene_17451}}
+
−
{{#set: in pathway=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-7778|PWY-7779|PWY-6588|PWY-6174|PWY-5789|PWY-6876|CENTFERM-PWY|PWY-7391|PWY-5741|PWY1-3|ACETOACETATE-DEG-PWY|PWY66-367|PWY-7216|PWY-922|PWY66-368|PWY-7401|PWY-6863|PWY-7524}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+

Revision as of 00:03, 19 March 2018

Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diphosphomevalonate_decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (R)-mevalonate diphosphate[c] + 1 ATP[c] => 1 isopentenyl diphosphate[c] + 1 phosphate[c] + 1 CO2[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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