Difference between revisions of "RXN0-5180"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12303 RXN-12303] == * direction: ** REVERSIBLE * common name: ** NAD(P)H dehydrogenase (plastoq...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] == * direction: ** LEFT-TO-R...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12303 RXN-12303] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** NAD(P)H dehydrogenase (plastoquinone)
+
−
** possible_vitamin_k_epoxide_plastid_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.6.5.2 EC-1.6.5.2]
+
** [http://enzyme.expasy.org/EC/4.1.2.52 EC-4.1.2.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[Plastoquinols]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
+
** 1 [[CPD-804]][c] '''=>''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD(P)H[c] '''+''' 1 a plastoquinone[c] '''+''' 1 H+[c] '''<=>''' 1 a plastoquinol[c] '''+''' 1 NAD(P)+[c]
+
** 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] '''=>''' 1 succinate semialdehyde[c] '''+''' 1 pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10318]]
+
* [[Tiso_gene_13940]]
−
** IN-SILICO_ANNOTATION
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** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7731]], superpathway of photosynthetic hydrogen production: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7731 PWY-7731]
+
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation: [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=NAD(P)H dehydrogenase (plastoquinone)}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
−
{{#set: common name=possible_vitamin_k_epoxide_plastid_protein}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
−
{{#set: ec number=EC-1.6.5.2}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=Tiso_gene_10318}}
+
{{#set: ec number=EC-4.1.2.52}}
−
{{#set: in pathway=PWY-7731}}
+
{{#set: gene associated=Tiso_gene_13940}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 01:03, 19 March 2018

Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] => 1 succinate semialdehyde[c] + 1 pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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