Difference between revisions of "Tiso gene 20417"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.18 EC-4.1.1.18]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[LYS]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CADAVERINE]][c]
+
** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[UREA]][c] '''+''' 1 [[PUTRESCINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 cadaverine[c]
+
** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 urea[c] '''+''' 1 putrescine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10395]]
+
* [[Tiso_gene_4415]]
−
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-461]], L-lysine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-461 PWY0-461]
+
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5468]], lupanine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5468 PWY-5468]
+
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6381]], bisucaberin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6381 PWY-6381]
+
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY0-1303]], aminopropylcadaverine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-6328]], L-lysine degradation X: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6328 PWY-6328]
+
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6375]], desferrioxamine E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6375 PWY-6375]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6376]], desferrioxamine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6376 PWY-6376]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00462 R00462]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05033 P05033]
+
** [http://www.uniprot.org/uniprot/P60654 P60654]
−
** [http://www.uniprot.org/uniprot/P21885 P21885]
+
** [http://www.uniprot.org/uniprot/P60653 P60653]
−
** [http://www.uniprot.org/uniprot/P0A9H3 P0A9H3]
+
** [http://www.uniprot.org/uniprot/P60651 P60651]
−
** [http://www.uniprot.org/uniprot/P52095 P52095]
+
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1.18}}
+
{{#set: ec number=EC-3.5.3.11}}
−
{{#set: gene associated=Tiso_gene_10395}}
+
{{#set: gene associated=Tiso_gene_4415}}
−
{{#set: in pathway=PWY0-461|PWY-5468|PWY-6381|PWY0-1303|PWY-6328|PWY-6375|PWY-6376}}
+
{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis}}
 

Revision as of 00:03, 19 March 2018

Reaction AGMATIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 agmatine[c] + 1 H2O[c] => 1 urea[c] + 1 putrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20417&oldid=28535"