Difference between revisions of "RXN-12561"

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(Created page with "Category:Gene == Gene Tiso_gene_5716 == * left end position: ** 627 * transcription direction: ** NEGATIVE * right end position: ** 3268 * centisome position: ** 4.8119726...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5716 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
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* left end position:
+
* direction:
−
** 627
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** REVERSIBLE
−
* transcription direction:
+
* common name:
−
** NEGATIVE
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** ORF
−
* right end position:
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* ec number:
−
** 3268
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** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
−
* centisome position:
+
−
** 4.8119726   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-12086]]
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* With identifiers:
−
** in-silico_annotation
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** 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
−
***ec-number
+
* With common name(s):
−
** [[pantograph]]-[[esiliculosus]]
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** 1 NADP+[c] '''+''' 1 D-threo-isocitrate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 NADPH[c] '''+''' 1 CO2[c]
−
* [[RXN-12579]]
+
 
−
** in-silico_annotation
+
== Genes associated with this reaction  ==
−
***ec-number
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_18262]]
−
* [[TRIACYLGLYCEROL-LIPASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
−
***ec-number
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
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* [[Tiso_gene_10809]]
−
* [[LIPAS-PWY]]
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** IN-SILICO_ANNOTATION
−
* [[PWY-6857]]
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***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''9''' reactions found over '''16''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=627}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
−
{{#set: right end position=3268}}
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* PIR:
−
{{#set: centisome position=4.8119726    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
−
{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
−
{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16100 P16100]
 +
** [http://www.uniprot.org/uniprot/P33198 P33198]
 +
** [http://www.uniprot.org/uniprot/P41561 P41561]
 +
** [http://www.uniprot.org/uniprot/P41562 P41562]
 +
** [http://www.uniprot.org/uniprot/P50214 P50214]
 +
** [http://www.uniprot.org/uniprot/P41560 P41560]
 +
** [http://www.uniprot.org/uniprot/P56063 P56063]
 +
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
 +
** [http://www.uniprot.org/uniprot/P21954 P21954]
 +
** [http://www.uniprot.org/uniprot/P08200 P08200]
 +
** [http://www.uniprot.org/uniprot/O29610 O29610]
 +
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
 +
** [http://www.uniprot.org/uniprot/P39126 P39126]
 +
** [http://www.uniprot.org/uniprot/P50216 P50216]
 +
** [http://www.uniprot.org/uniprot/P50215 P50215]
 +
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
 +
** [http://www.uniprot.org/uniprot/P50217 P50217]
 +
** [http://www.uniprot.org/uniprot/P41939 P41939]
 +
** [http://www.uniprot.org/uniprot/P48735 P48735]
 +
** [http://www.uniprot.org/uniprot/P53982 P53982]
 +
** [http://www.uniprot.org/uniprot/P50218 P50218]
 +
** [http://www.uniprot.org/uniprot/O65853 O65853]
 +
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
 +
** [http://www.uniprot.org/uniprot/O14254 O14254]
 +
** [http://www.uniprot.org/uniprot/O75874 O75874]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.1.1.42}}
 +
{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
 +
{{#set: in pathway=PWY-5913|PWY-6549|PWY-7268|P23-PWY|PWY-7124|P105-PWY|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|TCA|FERMENTATION-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:04, 19 March 2018

Reaction ISOCITDEH-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
    • 4 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 7 reactions found over 10 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 5 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 7 reactions found over 10 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 9 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12561&oldid=28595"