Difference between revisions of "Tiso gene 14450"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17897 RXN-17897] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin--nadp_root_isozy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17897 RXN-17897] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ornithine--oxo-glutarate aminotransferase
+
** ferredoxin--nadp_root_isozyme_chloroplastic
 +
** ferredoxin--nadp_embryochloroplastic
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.13 EC-2.6.1.13]
+
** [http://enzyme.expasy.org/EC/1.18.1.2 EC-1.18.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
+
** 1 [[NADPH]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADP]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 L-glutamate-5-semialdehyde[c]
+
** 1 NADPH[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''=>''' 1 H+[c] '''+''' 1 NADP+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11231]]
+
* [[Tiso_gene_17170]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19031]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_20055]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_20054]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17381]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_20168]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
+
{{#set: common name=ferredoxin--nadp_root_isozyme_chloroplastic}}
−
* LIGAND-RXN:
+
{{#set: common name=ferredoxin--nadp_embryochloroplastic}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
+
{{#set: ec number=EC-1.18.1.2}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: gene associated=Tiso_gene_17170|Tiso_gene_19031|Tiso_gene_20055|Tiso_gene_20054|Tiso_gene_17381|Tiso_gene_20168}}
−
{{#set: common name=Ornithine--oxo-glutarate aminotransferase}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.6.1.13}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_11231}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis}}
−
{{#set: in pathway=ARGASEDEG-PWY|PWY-6922|PWY-6344|PWY-3341|ARG-PRO-PWY|PWY-4981|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis}}
+

Revision as of 01:08, 19 March 2018

Reaction RXN-17897

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ferredoxin--nadp_root_isozyme_chloroplastic
    • ferredoxin--nadp_embryochloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14450&oldid=28901"