Difference between revisions of "OrDC"

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(Created page with "Category:Gene == Gene Tiso_gene_2485 == * left end position: ** 3231 * transcription direction: ** NEGATIVE * right end position: ** 5826 * centisome position: ** 16.80362...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] == * direction: ** LEFT-TO-RIGHT * common name: ** chloroplast_beta-keto_acyl_...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2485 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] ==
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* left end position:
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* direction:
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** 3231
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** chloroplast_beta-keto_acyl_reductase
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* right end position:
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* ec number:
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** 5826
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** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
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* centisome position:
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** 16.80362   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ARGSUCCINLYA-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CPD-14423]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-14424]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 NAD(P)H[c] '''+''' 1 3-oxo-docosapentaenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c] '''+''' 1 NAD(P)+[c]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9871]]
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** [[pantograph]]-[[creinhardtii]]
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** IN-SILICO_ANNOTATION
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* [[RXN-22]]
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***EC-NUMBER
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***ec-number
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***EC-NUMBER
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** experimental_annotation
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* [[Tiso_gene_9885]]
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***ec-number
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13083]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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== Pathways ==
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* [[PWY-5154]]
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* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
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* [[PWY-5]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[ARGSYN-PWY]]
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* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
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* [[PWY-4984]]
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** '''14''' reactions found over '''14''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
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* [[PWY-4983]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7400]]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3231}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=chloroplast_beta-keto_acyl_reductase}}
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{{#set: right end position=5826}}
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{{#set: ec number=EC-1.1.1.330}}
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{{#set: centisome position=16.80362    }}
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{{#set: gene associated=Tiso_gene_9871|Tiso_gene_9885|Tiso_gene_13083}}
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{{#set: reaction associated=ARGSUCCINLYA-RXN|RXN-22}}
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{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
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{{#set: pathway associated=PWY-5154|PWY-5|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:13, 19 March 2018

Reaction RXN-13443

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chloroplast_beta-keto_acyl_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD(P)H[c] + 1 3-oxo-docosapentaenoyl-CoA[c] + 1 H+[c] => 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c] + 1 NAD(P)+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=OrDC&oldid=29252"