Difference between revisions of "CPD0-2365"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-477 RXN66-477] == * direction: ** LEFT-TO-RIGHT * common name: ** straight chain fatty acyl-C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R00476 R00476] == * direction: ** LEFT-TO-RIGHT * common name: ** R532 * Synonym(s): == Reaction F...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-477 RXN66-477] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R00476 R00476] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** straight chain fatty acyl-CoA ligase
+
** R532
−
** polyketide_synthase
+
−
** long_chain_acyl-_synthetase
+
−
** acyl-_synthetase
+
−
** ORF
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Odd-Straight-Chain-234-Sat-FA]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Odd-Saturated-Fatty-Acyl-CoA]][c]
+
** 1.0 [[GLYCOLLATE]][c] '''+''' 1.0 [[NAD]][c] '''=>''' 1.0 [[PROTON]][c] '''+''' 1.0 [[NADH]][c] '''+''' 1.0 [[GLYOX]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 an odd numbered straight chain 2,3,4-saturated fatty acid[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an odd numbered straight chain 2,3,4-saturated fatty acyl CoA[c]
+
** 1.0 glycolate[c] '''+''' 1.0 NAD+[c] '''=>''' 1.0 H+[c] '''+''' 1.0 NADH[c] '''+''' 1.0 glyoxylate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9394]]
+
* [[Tiso_gene_18014]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[synechocystis]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-388]], fatty acid α-oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=straight chain fatty acyl-CoA ligase}}
+
{{#set: common name=R532}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: gene associated=Tiso_gene_18014}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: in pathway=}}
−
{{#set: common name=acyl-_synthetase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-6.2.1.3}}
+
−
{{#set: gene associated=Tiso_gene_9394|Tiso_gene_136|Tiso_gene_4191|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_348|Tiso_gene_7855}}
+
−
{{#set: in pathway=PWY66-388}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 00:17, 19 March 2018

Reaction R00476

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R532
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 glycolate[c] + 1.0 NAD+[c] => 1.0 H+[c] + 1.0 NADH[c] + 1.0 glyoxylate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD0-2365&oldid=29596"