Difference between revisions of "AAL fum"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] == * direction: ** REVERSIBLE * common...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** protoporphyrinogen_ix_oxidase_usually_abbreviated
+
** udp-galactopyranose_mutase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/5.1.3.5 EC-5.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
+
** 1 [[CPD-12513]][c] '''<=>''' 1 [[UDP-D-XYLOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 3 hydrogen peroxide[c] '''+''' 1 protoporphyrin IX[c]
+
** 1 UDP-&beta;-L-arabinopyranose[c] '''<=>''' 1 UDP-&alpha;-D-xylose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11986]]
+
* [[Tiso_gene_15395]]
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_15401]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[PWY-63]], UDP-L-arabinose biosynthesis I (from UDP-xylose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-63 PWY-63]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[synechocystis]]
+
*** Tool: [[pathwaytools]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[athaliana]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11320 11320]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01473 R01473]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
{{#set: common name=udp-galactopyranose_mutase}}
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
{{#set: ec number=EC-5.1.3.5}}
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
{{#set: gene associated=Tiso_gene_15395}}
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
{{#set: in pathway=PWY-63}}
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
+
−
{{#set: ec number=EC-1.3.3.4}}
+
−
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
+
−
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 00:17, 19 March 2018

Reaction UDP-ARABINOSE-4-EPIMERASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • udp-galactopyranose_mutase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-β-L-arabinopyranose[c] <=> 1 UDP-α-D-xylose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • Tiso_gene_15395
    • IN-SILICO_ANNOTATION
      • EC-NUMBER
    • EXPERIMENTAL_ANNOTATION
      • EC-NUMBER

Pathways

  • PWY-63, UDP-L-arabinose biosynthesis I (from UDP-xylose): PWY-63
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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