Difference between revisions of "UDP-GLUCURONATE-4-EPIMERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] == * direction: ** REVERSIBLE * common name: ** aminotransferase ** aspartate_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] == * direction: ** LEFT-TO-RIGHT * common name: ** R96 * Synonym(s): == Reaction Formula...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** aminotransferase
+
** R96
−
** aspartate_aminotransferase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c]
+
** 1.0 [[NEUROSPORENE]][c] '''+''' 1.0 [[OXYGEN-MOLECULE]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[CPD1F-114]][c] '''+''' 1.0 [[NADP]][c] '''+''' 2.0 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-phenylalanine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 2-oxo-3-phenylpropanoate[c]
+
** 1.0 all-trans neurosporene[c] '''+''' 1.0 oxygen[c] '''+''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''=>''' 1.0 all-trans-lycopene[c] '''+''' 1.0 NADP+[c] '''+''' 2.0 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17809]]
+
* [[Tiso_gene_916]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[synechocystis]]
−
***AUTOMATED-NAME-MATCH
+
* [[Tiso_gene_13369]]
−
* [[Tiso_gene_13538]]
+
** [[pantograph]]-[[synechocystis]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_7142]]
−
* [[Tiso_gene_6815]]
+
** [[pantograph]]-[[synechocystis]]
−
** IN-SILICO_ANNOTATION
+
* [[Tiso_gene_16794]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_917]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
−
* [[Tiso_gene_12889]]
+
* [[Tiso_gene_3092]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[synechocystis]]
−
***AUTOMATED-NAME-MATCH
+
* [[Tiso_gene_15802]]
−
* [[Tiso_gene_17718]]
+
** [[pantograph]]-[[synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_16795]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15680]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=aminotransferase}}
+
{{#set: common name=R96}}
−
{{#set: common name=aspartate_aminotransferase}}
+
{{#set: gene associated=Tiso_gene_916|Tiso_gene_13369|Tiso_gene_7142|Tiso_gene_16794|Tiso_gene_917|Tiso_gene_3092|Tiso_gene_15802|Tiso_gene_16795}}
−
{{#set: ec number=EC-2.6.1.1}}
+
{{#set: in pathway=}}
−
{{#set: gene associated=Tiso_gene_17809|Tiso_gene_13538|Tiso_gene_6815|Tiso_gene_12889|Tiso_gene_17718|Tiso_gene_15680}}
+
−
{{#set: in pathway=PWY-6318}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 00:18, 19 March 2018

Reaction R96

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R96
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 all-trans neurosporene[c] + 1.0 oxygen[c] + 1.0 NADPH[c] + 1.0 H+[c] => 1.0 all-trans-lycopene[c] + 1.0 NADP+[c] + 2.0 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDP-GLUCURONATE-4-EPIMERASE-RXN&oldid=29658"