Difference between revisions of "RXN-17858"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxyisourate_hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** 5-hydroxyisourate_hydrolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.2.17 EC-3.5.2.17]
+
** [http://enzyme.expasy.org/EC/2.6.1.19 EC-2.6.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[5-HYDROXYISOURATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-5821]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5-hydroxyisourate[c] '''+''' 1 H2O[c] '''=>''' 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] '''+''' 1 H+[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 4-aminobutanoate[c] '''<=>''' 1 succinate semialdehyde[c] '''+''' 1 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13181]]
+
* [[Tiso_gene_11231]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[synechocystis]]
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7394]], urate degradation to allantoin II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7394 PWY-7394]
+
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5691]], urate degradation to allantoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5691 PWY-5691]
+
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6536]], 4-aminobutanoate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6536 PWY-6536]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23736 23736]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23352 23352]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06601 R06601]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=5-hydroxyisourate_hydrolase}}
+
** [http://www.uniprot.org/uniprot/P22256 P22256]
−
{{#set: ec number=EC-3.5.2.17}}
+
** [http://www.uniprot.org/uniprot/P50457 P50457]
−
{{#set: gene associated=Tiso_gene_13181}}
+
** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
−
{{#set: in pathway=PWY-7394|PWY-5691}}
+
** [http://www.uniprot.org/uniprot/P50554 P50554]
 +
** [http://www.uniprot.org/uniprot/P80404 P80404]
 +
** [http://www.uniprot.org/uniprot/P14010 P14010]
 +
** [http://www.uniprot.org/uniprot/P17649 P17649]
 +
** [http://www.uniprot.org/uniprot/P40829 P40829]
 +
** [http://www.uniprot.org/uniprot/O13837 O13837]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-2.6.1.19}}
 +
{{#set: gene associated=Tiso_gene_11231}}
 +
{{#set: in pathway=PWY-4321|GLUDEG-I-PWY|P181-PWY|PWY-5022|PWY-6537|PWY-6536|PWY-6535}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 00:18, 19 March 2018

Reaction GABATRANSAM-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 4 reactions found over 5 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • P181-PWY, nicotine degradation I (pyridine pathway): P181-PWY
    • 2 reactions found over 17 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6537, 4-aminobutanoate degradation II: PWY-6537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6536, 4-aminobutanoate degradation III: PWY-6536
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I: PWY-6535
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17858&oldid=29666"