Difference between revisions of "Tiso gene 2435"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6148 PWY-6148] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-578822 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** ORF * Synonym(s): ** oxalsuccini...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6148 PWY-6148] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-578822 TAX-578822]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
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* common name:
 
* common name:
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** tetrahydromethanopterin biosynthesis
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** ORF
 
* Synonym(s):
 
* Synonym(s):
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** H4MPT biosynthesis
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** oxalsuccinic decarboxylase
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** isocitrate (NADP) dehydrogenase
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** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
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** NADP-specific isocitrate dehydrogenase
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** NADP-linked isocitrate dehydrogenase
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** NADP isocitric dehydrogenase
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** isocitrate dehydrogenase (NADP-dependent)
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** NADP-dependent isocitric dehydrogenase
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** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
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** NADP+-linked isocitrate dehydrogenase
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** IDH (ambiguous)
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** dual-cofactor-specific isocitrate dehydrogenase
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** NADP+-ICDH
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** NADP+-IDH
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** IDP
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** IDP1
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** IDP2
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** IDP3
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''14''' reactions in the full pathway
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* With identifiers:
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* [[H2NEOPTERINALDOL-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_2577]]
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** 1 H+[c] '''+''' 1 oxalosuccinate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_2576]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15733]]
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* Gene: [[Tiso_gene_18262]]
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** 1 associated gene(s):
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_11659]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_10809]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=CHORPYRLY-RXN CHORPYRLY-RXN]
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10010 RXN-10010]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10011 RXN-10011]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10012 RXN-10012]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10013 RXN-10013]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10014 RXN-10014]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15555 RXN-15555]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15732 RXN-15732]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15734 RXN-15734]
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15741 RXN-15741]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15742 RXN-15742]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8124 RXN-8124]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-578822}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-224756}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
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{{#set: taxonomic range=TAX-183925}}
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-183939}}
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{{#set: common name=ORF}}
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{{#set: common name=tetrahydromethanopterin biosynthesis}}
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{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
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{{#set: common name=H4MPT biosynthesis}}
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{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
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{{#set: reaction found=2}}
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{{#set: in pathway=}}
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{{#set: total reaction=14}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: completion rate=14.0}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:44, 21 March 2018

Reaction RXN-8642

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • Synonym(s):
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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