Difference between revisions of "RXN-8642"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glyceraldehyde-3-phos...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fad_synthetase * ec numbe...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glyceraldehyde-3-phosphate_dehydrogenase
+
** fad_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.13 EC-1.2.1.13]
+
** [http://enzyme.expasy.org/EC/2.7.7.2 EC-2.7.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[GAP]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FMN]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 NADPH[c] '''=>''' 1 phosphate[c] '''+''' 1 NADP+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 FMN[c] '''=>''' 1 FAD[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6766]]
+
* Gene: [[Tiso_gene_5393]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_6765]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_5392]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_7479]]
−
* [[Tiso_gene_20000]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_1086]]
−
***EC-NUMBER
+
** Source: [[orthology-synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10646]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10296 10296]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17237 17237]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09672 P09672]
+
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
−
** [http://www.uniprot.org/uniprot/P09094 P09094]
+
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
−
** [http://www.uniprot.org/uniprot/P12858 P12858]
+
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
−
** [http://www.uniprot.org/uniprot/P12859 P12859]
+
−
** [http://www.uniprot.org/uniprot/P12860 P12860]
+
−
** [http://www.uniprot.org/uniprot/P09315 P09315]
+
−
** [http://www.uniprot.org/uniprot/P25856 P25856]
+
−
** [http://www.uniprot.org/uniprot/Q7M1R8 Q7M1R8]
+
−
** [http://www.uniprot.org/uniprot/Q7M1R7 Q7M1R7]
+
−
** [http://www.uniprot.org/uniprot/Q37174 Q37174]
+
−
** [http://www.uniprot.org/uniprot/P30724 P30724]
+
−
** [http://www.uniprot.org/uniprot/P80505 P80505]
+
−
** [http://www.uniprot.org/uniprot/Q55245 Q55245]
+
−
** [http://www.uniprot.org/uniprot/O22534 O22534]
+
−
** [http://www.uniprot.org/uniprot/P50362 P50362]
+
−
** [http://www.uniprot.org/uniprot/P19866 P19866]
+
−
** [http://www.uniprot.org/uniprot/Q41019 Q41019]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glyceraldehyde-3-phosphate_dehydrogenase}}
+
{{#set: common name=fad_synthetase}}
−
{{#set: ec number=EC-1.2.1.13}}
+
{{#set: ec number=EC-2.7.7.2}}
−
{{#set: gene associated=Tiso_gene_6766|Tiso_gene_6765|Tiso_gene_20000|Tiso_gene_10646}}
+
{{#set: gene associated=Tiso_gene_5393|Tiso_gene_5392|Tiso_gene_7479|Tiso_gene_1086}}
−
{{#set: in pathway=CALVIN-PWY}}
+
{{#set: in pathway=PWY66-366|PWY-6167|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: reconstruction category=manual|annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:44, 21 March 2018

Reaction FADSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fad_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 FMN[c] => 1 FAD[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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