Difference between revisions of "TAURINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNPOXI-RXN PNPOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxamine_5_-phosphate...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glyceraldehyde-3-phos...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNPOXI-RXN PNPOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pyridoxamine_5_-phosphate_oxidase-related_fmn-binding
+
** glyceraldehyde-3-phosphate_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.3.5 EC-1.4.3.5]
+
** [http://enzyme.expasy.org/EC/1.2.1.13 EC-1.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXINE-5P]][c] '''=>''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 pyridoxine 5'-phosphate[c] '''=>''' 1 pyridoxal 5'-phosphate[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 H+[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 NADPH[c] '''=>''' 1 phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1471]]
+
* Gene: [[Tiso_gene_6766]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_6765]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20000]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10646]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[manual-primary_network]]
−
*** Tool: [[pantograph]]
+
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15149 15149]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10296 10296]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00278 R00278]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P09672 P09672]
 +
** [http://www.uniprot.org/uniprot/P09094 P09094]
 +
** [http://www.uniprot.org/uniprot/P12858 P12858]
 +
** [http://www.uniprot.org/uniprot/P12859 P12859]
 +
** [http://www.uniprot.org/uniprot/P12860 P12860]
 +
** [http://www.uniprot.org/uniprot/P09315 P09315]
 +
** [http://www.uniprot.org/uniprot/P25856 P25856]
 +
** [http://www.uniprot.org/uniprot/Q7M1R8 Q7M1R8]
 +
** [http://www.uniprot.org/uniprot/Q7M1R7 Q7M1R7]
 +
** [http://www.uniprot.org/uniprot/Q37174 Q37174]
 +
** [http://www.uniprot.org/uniprot/P30724 P30724]
 +
** [http://www.uniprot.org/uniprot/P80505 P80505]
 +
** [http://www.uniprot.org/uniprot/Q55245 Q55245]
 +
** [http://www.uniprot.org/uniprot/O22534 O22534]
 +
** [http://www.uniprot.org/uniprot/P50362 P50362]
 +
** [http://www.uniprot.org/uniprot/P19866 P19866]
 +
** [http://www.uniprot.org/uniprot/Q41019 Q41019]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=pyridoxamine_5_-phosphate_oxidase-related_fmn-binding}}
+
{{#set: common name=glyceraldehyde-3-phosphate_dehydrogenase}}
−
{{#set: ec number=EC-1.4.3.5}}
+
{{#set: ec number=EC-1.2.1.13}}
−
{{#set: gene associated=Tiso_gene_1471}}
+
{{#set: gene associated=Tiso_gene_6766|Tiso_gene_6765|Tiso_gene_20000|Tiso_gene_10646}}
−
{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY|PYRIDOXSYN-PWY}}
+
{{#set: in pathway=CALVIN-PWY}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:44, 21 March 2018

Reaction 1.2.1.13-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glyceraldehyde-3-phosphate_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 1,3-bisphospho-D-glycerate[c] + 1 NADPH[c] => 1 phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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