Difference between revisions of "Tiso gene 14511"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_14511 == * Synonym(s): == Reactions associated == * ACYLCOADEHYDROG-RXN ** pantograph-esiliculosus * LONG-CHAIN-FATTY-ACYL-C...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == |
| + | * direction: | ||
| + | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** serine_palmitoyltransferase | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50] | ||
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | + | ** 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c] | |
| − | + | * With common name(s): | |
| − | ** [[ | + | ** 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c] |
| − | * [[ | + | |
| − | ** [[ | + | == Genes associated with this reaction == |
| − | * [[ | + | Genes have been associated with this reaction based on different elements listed below. |
| − | + | * Gene: [[Tiso_gene_10992]] | |
| − | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ** [[ | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * [[ | + | ** Source: [[orthology-athaliana]] |
| − | ** [[pantograph]] | + | ** Source: [[orthology-esiliculosus]] |
| − | * [[ | + | == Pathways == |
| − | * | + | * [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] |
| − | + | ** '''3''' reactions found over '''13''' reactions in the full pathway | |
| − | * [[ | + | * [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12] |
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY] | ||
| + | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-athaliana]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761] |
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P25045 P25045] | ||
| + | ** [http://www.uniprot.org/uniprot/O15270 O15270] | ||
| + | ** [http://www.uniprot.org/uniprot/P48241 P48241] | ||
| + | ** [http://www.uniprot.org/uniprot/Q09925 Q09925] | ||
| + | ** [http://www.uniprot.org/uniprot/P40970 P40970] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6] | ||
| + | ** [http://www.uniprot.org/uniprot/Q20375 Q20375] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9M304 Q9M304] | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=serine_palmitoyltransferase}} | ||
| + | {{#set: ec number=EC-2.3.1.50}} | ||
| + | {{#set: gene associated=Tiso_gene_10992}} | ||
| + | {{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Revision as of 14:44, 21 March 2018
Contents
Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- serine_palmitoyltransferase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 SER[c] + 1 PALMITYL-COA[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 DEHYDROSPHINGANINE[c] + 1 CO-A[c]
- With common name(s):
- 1 L-serine[c] + 1 palmitoyl-CoA[c] + 1 H+[c] => 1 CO2[c] + 1 3-dehydrosphinganine[c] + 1 coenzyme A[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_10992
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-5129, sphingolipid biosynthesis (plants): PWY-5129
- 3 reactions found over 13 reactions in the full pathway
- PWY3DJ-12, ceramide de novo biosynthesis: PWY3DJ-12
- 4 reactions found over 4 reactions in the full pathway
- SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast): SPHINGOLIPID-SYN-PWY
- 2 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
