Difference between revisions of "Tiso gene 12478"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5068 PWY-5068] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligas...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5068 PWY-5068] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** chlorophyll cycle
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** dna_ligase
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** dna_ligase_mrna_capping_enzyme
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7]
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** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1]
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** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** chlorophyll b biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[RXN-7674]]
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** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_19542]]
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** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 DNAn[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-7676]]
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* Gene: [[Tiso_gene_11251]]
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** 5 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_152]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_4002]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_13817]]
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* Gene: [[Tiso_gene_3498]]
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*** [[Tiso_gene_12611]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_8091]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14250]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN-7677]]
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** Source: [[orthology-esiliculosus]]
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** 5 associated gene(s):
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* Gene: [[Tiso_gene_6743]]
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*** [[Tiso_gene_152]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_12611]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_4002]]
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* Gene: [[Tiso_gene_14249]]
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*** [[Tiso_gene_13817]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_8091]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_12142]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN1F-66]]
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== Pathways  ==
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_19542]]
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* Category: [[orthology]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-creinhardtii]]
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* Category: [[annotation]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7678 RXN-7678]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7679 RXN-7679]
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== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5068 PWY-5068]
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** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
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{{#set: taxonomic range=TAX-1117}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.uniprot.org/uniprot/P12000 P12000]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P18858 P18858]
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{{#set: common name=chlorophyll cycle}}
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** [http://www.uniprot.org/uniprot/P35970 P35970]
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{{#set: common name=chlorophyll b biosynthesis}}
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** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/Q57635 Q57635]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P49917 P49917]
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** [http://www.uniprot.org/uniprot/P49916 P49916]
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** [http://www.uniprot.org/uniprot/P37913 P37913]
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** [http://www.uniprot.org/uniprot/P51892 P51892]
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** [http://www.uniprot.org/uniprot/P16272 P16272]
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** [http://www.uniprot.org/uniprot/P33798 P33798]
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** [http://www.uniprot.org/uniprot/P00970 P00970]
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** [http://www.uniprot.org/uniprot/P00969 P00969]
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** [http://www.uniprot.org/uniprot/P04819 P04819]
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** [http://www.uniprot.org/uniprot/P19088 P19088]
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** [http://www.uniprot.org/uniprot/P07717 P07717]
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** [http://www.uniprot.org/uniprot/P26813 P26813]
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** [http://www.uniprot.org/uniprot/Q02093 Q02093]
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** [http://www.uniprot.org/uniprot/Q23694 Q23694]
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** [http://www.uniprot.org/uniprot/Q67480 Q67480]
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** [http://www.uniprot.org/uniprot/Q42572 Q42572]
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** [http://www.uniprot.org/uniprot/P20492 P20492]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=dna_ligase}}
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{{#set: common name=dna_ligase_mrna_capping_enzyme}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.5.1.7}}
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{{#set: ec number=EC-6.5.1.1}}
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{{#set: ec number=EC-6.5.1.6}}
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{{#set: gene associated=Tiso_gene_11251|Tiso_gene_3498|Tiso_gene_14250|Tiso_gene_6743|Tiso_gene_14249|Tiso_gene_12142}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:45, 21 March 2018

Reaction DNA-LIGASE-ATP-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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