Difference between revisions of "PWY-7417"

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(Created page with "Category:Gene == Gene Tiso_gene_16970 == * left end position: ** 1211 * transcription direction: ** POSITIVE * right end position: ** 3937 * centisome position: ** 30.2674...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** mitochondrial_malic_e...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16970 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] ==
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* left end position:
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* direction:
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** 1211
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** mitochondrial_malic_enzyme
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* right end position:
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** ORF
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** 3937
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
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** 30.267433   
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** [http://enzyme.expasy.org/EC/1.1.1.39 EC-1.1.1.39]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.1.1.271-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c] '''+''' 1 NADH[c]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[PWY-66]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_12896]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6675]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12200]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1211}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12653 12653]
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{{#set: right end position=3937}}
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* LIGAND-RXN:
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{{#set: centisome position=30.267433    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
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{{#set: reaction associated=1.1.1.271-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-66}}
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** [http://www.uniprot.org/uniprot/Q48662 Q48662]
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** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
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** [http://www.uniprot.org/uniprot/O59029 O59029]
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** [http://www.uniprot.org/uniprot/P16468 P16468]
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** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
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** [http://www.uniprot.org/uniprot/P26616 P26616]
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** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
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** [http://www.uniprot.org/uniprot/P37224 P37224]
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** [http://www.uniprot.org/uniprot/P37225 P37225]
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** [http://www.uniprot.org/uniprot/P37221 P37221]
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** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
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** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=mitochondrial_malic_enzyme}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.38}}
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{{#set: ec number=EC-1.1.1.39}}
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{{#set: gene associated=Tiso_gene_12896|Tiso_gene_6675|Tiso_gene_12200}}
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{{#set: in pathway=PWY-3641|GLUCONEO-PWY|PWY-7384|PWY-7686|PWY-7115|PWY-7118}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:46, 21 March 2018

Reaction 1.1.1.39-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mitochondrial_malic_enzyme
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-malate[c] + 1 NAD+[c] => 1 pyruvate[c] + 1 CO2[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3641, L-carnitine degradation III: PWY-3641
    • 2 reactions found over 3 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-7686, L-malate degradation II: PWY-7686
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7417&oldid=30051"